View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_high_19 (Length: 383)
Name: NF21043_high_19
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 55178685 - 55179043
Alignment:
| Q |
9 |
gaagaatatcaagaaatacaagaaaatcaaaagacaagttacatgttacttgctccacaatccaacaaggttgaagtcaaaatgtgacaagggaatgaaa |
108 |
Q |
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| T |
55178685 |
gaagaaaatcaagaaatacaagaaaatcaaaagacaagttacatgttacttgctccacaatccaacaaggttgaagtcaaaatgtgacaagggaatgaaa |
55178784 |
T |
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| Q |
109 |
ttaaacaggcttcagcatttaggatctgtacgcgtataacagaatagaaagccacagatggaaaatttctgtccaaaagaagttaaaaagataattgaat |
208 |
Q |
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| T |
55178785 |
ttaaacaggcttcagcatttaggatctgtacgcgtataacagaatagaaagccacagatggcaactttctgtccaaaagaagttaaaaagataattgaat |
55178884 |
T |
|
| Q |
209 |
ctgaatcccttgacgaaaaaatgtttctcagtctcacactaaaaggaaaattatagtttttgcatcacttggcgtaagacatgattttgaagatatgcat |
308 |
Q |
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| T |
55178885 |
ctgaatcccttgacgaaaaaaagtttctcagtctcacactaaaaggaaaattatagtttttgcatcacttggcgtaagacatgattttgaagatatgcat |
55178984 |
T |
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| Q |
309 |
gaattggattttaaccatcatagcaaaagacaacatacaacaaatggcatcagaaaaat |
367 |
Q |
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| T |
55178985 |
gaattggattttaaccatcatagcaaaagacaacatataacaaatggcatcagaaaaat |
55179043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 126 - 314
Target Start/End: Original strand, 55175842 - 55176028
Alignment:
| Q |
126 |
tttaggatctgtacgcgtataacagaatagaaagccacagatggaaaatttctgtccaaaagaagttaaaaagataattgaatctgaatcccttga-cga |
224 |
Q |
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| T |
55175842 |
tttaggatctgtacgcgtatcggagaatagaaagtcacagaaggcggctttctgtccaaaagaagttaaaaggataattgaatctgaagccctgaaacaa |
55175941 |
T |
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| Q |
225 |
aaaaatgtttctcagtctcacactaaaaggaaaattatagtttttgcatcacttggcgtaagacatgattttgaagatatgcatgaattg |
314 |
Q |
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| T |
55175942 |
aaaaacg---ctcagtctcacactataaggaaaattatagtttttgcatcacttggcataagacatgggtgtgaagatatgtatgaattg |
55176028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 55175708 - 55175809
Alignment:
| Q |
18 |
caagaaatacaagaaaatcaaaagacaagttacatgttacttgctccacaatccaacaaggttgaagtcaaaatgtgacaagggaatgaaattaaacagg |
117 |
Q |
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|||||| |||||||| |||||||||||||| ||||||||||||||||||| || || |||||||||||||||| | |||||||||| ||| |||| ||| |
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| T |
55175708 |
caagaagtacaagaatatcaaaagacaagtgacatgttacttgctccacattcaaagaaggttgaagtcaaaacgcaacaagggaataaaagtaaagagg |
55175807 |
T |
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| Q |
118 |
ct |
119 |
Q |
| |
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|| |
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|
| T |
55175808 |
ct |
55175809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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