View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_high_22 (Length: 358)
Name: NF21043_high_22
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 38220096 - 38220409
Alignment:
| Q |
14 |
agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38220096 |
agatcacataaccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata |
38220195 |
T |
|
| Q |
114 |
ctcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaa |
213 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38220196 |
ctcaacctgaaacaaagaaa-tccatattgctttactatataatacccaacattggattagtgttacatttcagagttaaatcgagattgagacaaacaa |
38220294 |
T |
|
| Q |
214 |
actacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaagctaggt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38220295 |
actacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaatctaggt |
38220394 |
T |
|
| Q |
314 |
attttggatgttaat |
328 |
Q |
| |
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||||||||| ||||| |
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| T |
38220395 |
attttggattttaat |
38220409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 38242951 - 38243262
Alignment:
| Q |
14 |
agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata |
113 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||| |||||| |||| |||| |||||||||||||| |
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| T |
38242951 |
agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgata |
38243050 |
T |
|
| Q |
114 |
ctcaacctgaaacaattaaaatccatattgctttactatataatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaa |
213 |
Q |
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||||| ||||||||| ||| ||||| ||||| | ||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| || |
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| T |
38243051 |
ctcaatctgaaacaaagaaa-tccatgttgct---cactatgatacccaacaatgggctagtgttacatttaagagttaaatcgagattgagacaaataa |
38243146 |
T |
|
| Q |
214 |
actacaaatttggattccttgcaatctcgagactctacattcacgcaatcgacatagactgttggttc-aagatcggacggtcctagatttcaagctagg |
312 |
Q |
| |
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| ||| ||||||||||||| ||| | |||||||||||||||||||||| || |||||||||| | |||||| || |||||||||||||||||| || |
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| T |
38243147 |
attactaatttggattcctagcagccgagagactctacattcacgcaatcagcacagactgttggaccaaagatcagaaggtcctagatttcaagctcgg |
38243246 |
T |
|
| Q |
313 |
tattttggatgttaat |
328 |
Q |
| |
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|||||||||| ||||| |
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|
| T |
38243247 |
tattttggattttaat |
38243262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 38237976 - 38238090
Alignment:
| Q |
14 |
agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||| |||| |||||||||||||| |
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| T |
38237976 |
agatcatatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgata |
38238075 |
T |
|
| Q |
114 |
ctcaacctgaaacaa |
128 |
Q |
| |
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|||| ||||||||| |
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| T |
38238076 |
ctcattctgaaacaa |
38238090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 38226437 - 38226556
Alignment:
| Q |
14 |
agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata |
113 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| |||||||||||| |||||||||||||| || ||||||| |||| ||| |||||||||||||| |
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| T |
38226437 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
38226536 |
T |
|
| Q |
114 |
ctcaacctgaaacaattaaa |
133 |
Q |
| |
|
|||| ||||||||| |||| |
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|
| T |
38226537 |
ctcagtctgaaacaaataaa |
38226556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 38214063 - 38214187
Alignment:
| Q |
19 |
acatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaa |
118 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||| ||||| | |||||| || ||||||||||||||||||| |
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| T |
38214063 |
acatagccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaa |
38214162 |
T |
|
| Q |
119 |
cctgaaacaattaaaatccatattgct |
145 |
Q |
| |
|
|||||||||| ||||||||| ||||| |
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| T |
38214163 |
cctgaaacaa--aaaatccatgttgct |
38214187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 38253304 - 38253418
Alignment:
| Q |
14 |
agatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata |
113 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||| |||| || ||||||||||| |||||||| ||||| || | | || |||| |||| ||||| ||| |
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| T |
38253304 |
agatcacatagccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcata |
38253403 |
T |
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| Q |
114 |
ctcaacctgaaacaa |
128 |
Q |
| |
|
||||||||||||||| |
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| T |
38253404 |
ctcaacctgaaacaa |
38253418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 38248176 - 38248264
Alignment:
| Q |
39 |
tgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
128 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||||||| |||| || | |||| |||| |||||||| |||||||||||||||||||| |
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| T |
38248176 |
tgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaacaa |
38248264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 17454528 - 17454647
Alignment:
| Q |
9 |
agcacagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaact |
108 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||| ||||| |||| |||| ||||||||| |
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| T |
17454528 |
agcatagatcacatagccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaact |
17454627 |
T |
|
| Q |
109 |
tgatactcaacctgaaacaa |
128 |
Q |
| |
|
|||||||||| ||||||||| |
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| T |
17454628 |
tgatactcaatctgaaacaa |
17454647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 17433449 - 17433568
Alignment:
| Q |
9 |
agcacagatcacatagccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaact |
108 |
Q |
| |
|
|||| |||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||||||| | |||| ||||| | || |||| ||||||||| |
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|
| T |
17433449 |
agcatagatcacatatccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaact |
17433548 |
T |
|
| Q |
109 |
tgatactcaacctgaaacaa |
128 |
Q |
| |
|
|||||||||| ||||||||| |
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|
| T |
17433549 |
tgatactcaatctgaaacaa |
17433568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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