View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_high_27 (Length: 334)
Name: NF21043_high_27
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 36 - 279
Target Start/End: Complemental strand, 37961231 - 37960988
Alignment:
| Q |
36 |
gtccatacatgcccttctacgcataaaactagtattcattactaaccttgttgatttggtaattacggaggcgagtgcagattctgtttgtgacttcaag |
135 |
Q |
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| T |
37961231 |
gtccaaacatgcacttctaagcataaaactggtattcattactaaccttgttgctttggtaattacggaggccagtgcagattccgtttgtgacttcaag |
37961132 |
T |
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| Q |
136 |
tagtttctggtactcagggttgagctgtacttctttcgaccaatatccagcggttaaatttatgatttgcacaagtaattcagcttctcttttggatcta |
235 |
Q |
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| T |
37961131 |
tagtttctggtactcaggattgagctgtacttcttttgaccaatatccagcggttaaatttatgatttgcacaagtaatttagcttctcttttggatttg |
37961032 |
T |
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| Q |
236 |
tttccttcatagtgccagcttgagaaccactttttccactgatc |
279 |
Q |
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| T |
37961031 |
tttccttcattgacccagcttgaaaaccacctttgccactgatc |
37960988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 12633391 - 12633651
Alignment:
| Q |
18 |
tctgaaaactgactgtcggtccatacatgcccttctacgcataaaa-ctagtattcattactaaccttgttgatttggtaattacggaggcgagtgcaga |
116 |
Q |
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| T |
12633391 |
tctgaaaactgactgta--tccaaacatgtacttctaagcataaaaactagcattcactactaaccttgttgatttgttaattacggaggccggtgcaga |
12633488 |
T |
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| Q |
117 |
ttctgtttgtgacttcaagtagtttctggtactcagggttgagctgtacttctttcgaccaatatccagcggttaaatttatgatttgcacaagtaattc |
216 |
Q |
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| T |
12633489 |
ttctattagtgacataaagtagtttctggtactcagggttgagttgtacttcttttgacaaatatccagcggttaaatttatgatttgcacaagtaattc |
12633588 |
T |
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| Q |
217 |
agcttctcttttggatctatttccttcatagtgccagcttgagaaccactttttccactgatc |
279 |
Q |
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| T |
12633589 |
agcttctcttttggatttgtttccttcatagtgccagcttgagaaccacctttgccactgatc |
12633651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 31151043 - 31151300
Alignment:
| Q |
18 |
tctgaaaactgactgtcggtccatacatgcccttctacgcataaaactagtattcattactaaccttgttgatttggtaattacggaggcgagtgcagat |
117 |
Q |
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| T |
31151043 |
tctgaaaactgattgtcggtccaaacatgcacttctaagcataaaactagtattcattattaacctaat-gctttggaaattacggaggccagtgcagat |
31151141 |
T |
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| Q |
118 |
tctgtttgtgacttcaagtagtttctggtactcagggttgagctgtacttctttcgaccaatatccagcggttaaatttatgatttgcacaagtaattca |
217 |
Q |
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| T |
31151142 |
tatgtttgtgacatcaagtagtttattgtactctggattgagatgtacatcttttgtccaatttcccgcggttaaatttatgatttccacaagtaattca |
31151241 |
T |
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| Q |
218 |
gcttctcttttggatctatttccttcatagtgccagcttgagaaccactttttccactgat |
278 |
Q |
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| T |
31151242 |
gcttctcttttggatttgtttccttcatcgtgcca--ttgagaaccacctttgccactgat |
31151300 |
T |
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