View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_high_3 (Length: 651)
Name: NF21043_high_3
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 598; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 7 - 632
Target Start/End: Original strand, 32818287 - 32818911
Alignment:
| Q |
7 |
tcgaagaaaataggaaaagaatcaatatagcagatattgtaatttatggaaagttctatgataatttatgaaaagctaaacattgcagcagtctaatttg |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32818287 |
tcgaaaaaaataggaaaagaatcaatatagcagatattgtaatttatggaaagttctatgataatttatgaaaagctaaacattgcagcagtctaatttg |
32818386 |
T |
|
| Q |
107 |
aataaatcaccattgttctacgatatgcagtttagaagaaagtgttaactgatagcggcactatagcactgtagcgcagcgaaatttgaacaaacagctc |
206 |
Q |
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||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32818387 |
aataaatcaccatcgttctacgata-gcagtttagaacaaagtgttaactgatagcggcactatagcactgtagcgcagcgaaatttgaacaaacagctc |
32818485 |
T |
|
| Q |
207 |
tttgtcgcgactagtgatcaacaccattgtgcttgccacgacagactaaatttctagaattaagggaagtgcatggaataaagaagaatatgctatttca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32818486 |
tttgtcgcgactagtgatcaacaccattgtgcttgccacgacagactaaatttctagaattaagggaagtgcatggaataaagaagaatatgctatttca |
32818585 |
T |
|
| Q |
307 |
gccttataattcgttgtgaatctaggtactatagtaattacctatttccaaccaaaactgctggttctttaacaatttccttcatgaagtccacgacttg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32818586 |
gccttataattcgttgtgaatctaggtactatagtaattacctatttccaaccaaaaccgctggttctttaacaatttccttcatgaagtccacgacttg |
32818685 |
T |
|
| Q |
407 |
atccctccacaccatggcatcataatcgacgagtgctttgtcactccacccaaatccaagcaagtctaaggcatacaccttgtgcttcttagccaattct |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32818686 |
atccctccacaccatggcatcataatcgacgagtgctttgtcactccacccaaatccaagcaagtctaaggcataaaccttgtgcttcttagccaattct |
32818785 |
T |
|
| Q |
507 |
ggaatattgtatctggagatatgtaaataaagtgtataaagatatatggctacacaacaaaaaattaacttttcggacagacaattacagccactttaat |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32818786 |
ggaatattgtatctggagatatgtaaataaagtgtataaagatatatggctacacaacaaaaaattaacttttcggacagacaattacagccactttaat |
32818885 |
T |
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| Q |
607 |
aaacatttgaaagagctatagcaaca |
632 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32818886 |
aaacatttgaaagagctatagcaaca |
32818911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 16690963 - 16690924
Alignment:
| Q |
162 |
cggcactatagcactgtagcgcagcgaaatttgaacaaac |
201 |
Q |
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| T |
16690963 |
cggcactatagcactgttgcgaagcgaaatttgaacaaac |
16690924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 19771691 - 19771647
Alignment:
| Q |
157 |
gatagcggcactatagcactgtagcgcagcgaaatttgaacaaac |
201 |
Q |
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| T |
19771691 |
gatagcggcactatagcattgtagcgtagcaacatttgaacaaac |
19771647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 30974468 - 30974509
Alignment:
| Q |
159 |
tagcggcactatagcactgtagcgcagcgaaatttgaacaaa |
200 |
Q |
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| T |
30974468 |
tagcggcactatagcactgtagcctagcggaatttgaacaaa |
30974509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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