View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_high_39 (Length: 254)
Name: NF21043_high_39
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 15836226 - 15836009
Alignment:
| Q |
22 |
tcatcacaattttcttcatctctcaactttatttcacaatggctgccgtcacctcgttggtccacctgagacctatactctcaatttcctctttctcctc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
15836226 |
tcatcacaattttcttcatctctcaactttatttcacaatggctgccgtcacctcgttggtccacctgagacctagaatctcaatttcctctttctcctc |
15836127 |
T |
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| Q |
122 |
tcaactttatttctcaacaacaatgcccgccgtcactctccttggcccacctgagatctatactctcaaatcaa------accctaaccctaccaccatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15836126 |
tcaactttatttctcaacaacaatgcccgccgtcactctccttggcccacctgagatctatactctcaaatcaaaccccaaccctaaccctaccaccatc |
15836027 |
T |
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| Q |
216 |
ccaaccgctcaaaccacc |
233 |
Q |
| |
|
|||||||| |||||||| |
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| T |
15836026 |
acaaccgctgaaaccacc |
15836009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 19796893 - 19796793
Alignment:
| Q |
132 |
ttctcaacaacaatgcccgccgtcactctccttggcccacctgagatctatactctcaaatcaaaccctaaccctaccaccatcccaaccgctcaaacca |
231 |
Q |
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||||||||||||||| |||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| | | ||||||||||||| |
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| T |
19796893 |
ttctcaacaacaatggccgccgtcgctctcgttggcccacctgagatctattcactcaaatcaaaccctaaccctaccaccaccaccaccgctcaaacca |
19796794 |
T |
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| Q |
232 |
c |
232 |
Q |
| |
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| |
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| T |
19796793 |
c |
19796793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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