View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_high_4 (Length: 646)
Name: NF21043_high_4
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 12 - 632
Target Start/End: Original strand, 8839832 - 8840455
Alignment:
| Q |
12 |
atcatcaaatggaggaagagaagaaggaaggaaatgcagaaaccattgaggctgtgaagtctcctcctatctgtgagaaggtttcagaagacattgatca |
111 |
Q |
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| T |
8839832 |
atcatcaaatggaggaagagaacaaggaaggaaatgcagaaaccattgaggctgtgaagtctccccctatctgtgagaaggtttcagaagacattgatca |
8839931 |
T |
|
| Q |
112 |
ttttcttcttcatgagaaagaaggagtgtcgtttgagattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaact |
211 |
Q |
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| T |
8839932 |
ttttcttctgcatgagaaagaaggagtgtcgtttgagattcctggttacatagagaagtttttggatcaggtggaggagaatatggtgaagaatgaaact |
8840031 |
T |
|
| Q |
212 |
ggagaacggaaaggaaaatgggaagagattatggagaaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgattc |
311 |
Q |
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| T |
8840032 |
ggagaacggaaaggaaaatgggaagagattatggagaaagataaatggttgcttgaatctgtgcatcgaatttcgaagcttaagaaaatgttgatgattc |
8840131 |
T |
|
| Q |
312 |
atgatgaaaaagaaaccatagatgaaagaagaaagtcaatagccaatcgtgttggtaaaattcaacagaaagcgatggcgtttttggaagaagattttcg |
411 |
Q |
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| T |
8840132 |
atgatgaaaaagaaaccatagatgaaagaagaaagtcaatagccaatcgtgttggtacaattcaacagaaagcgatggcgtttttggaagaagattttcg |
8840231 |
T |
|
| Q |
412 |
cgtgttgatagaatattctagaatccagaccgaagtgaatcctgatatcaatatcaatgaaaaggttgatgcaaaacgaa---aagtggcgtcagatcaa |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| |
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| T |
8840232 |
cgtgttgatagaatattctagaatccagaccgaagtgaatcctgatatcaatatcaatgaaaaggttgatgcaaaacgaaaacaagtggtgtcggatcaa |
8840331 |
T |
|
| Q |
509 |
caggacgggcaatcagatcatcaggatcaaccagaagaattcgaaacgaattttcctggttatcctgatgaggcgattgtttgtatgagtaagattgtgg |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8840332 |
caggacgggcaatcagatcatcaggatcaaccagaagaattcgaaacgaattttcctggttatcctgatgaggcgattgtttgtatgagcaagattgtgg |
8840431 |
T |
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| Q |
609 |
gggagatgttgatcggaggatatg |
632 |
Q |
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| T |
8840432 |
gggagatgttgatcggaggatatg |
8840455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 10627094 - 10627062
Alignment:
| Q |
86 |
gagaaggtttcagaagacattgatcattttctt |
118 |
Q |
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| T |
10627094 |
gagaaggtttcagaagacattgatcaatttctt |
10627062 |
T |
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