View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21043_high_43 (Length: 248)

Name: NF21043_high_43
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21043_high_43
NF21043_high_43
[»] chr4 (1 HSPs)
chr4 (17-239)||(18925418-18925640)
[»] chr7 (13 HSPs)
chr7 (21-186)||(4864123-4864288)
chr7 (17-168)||(4631124-4631275)
chr7 (48-174)||(4845753-4845879)
chr7 (21-186)||(4696919-4697084)
chr7 (60-174)||(4667181-4667295)
chr7 (17-187)||(4643904-4644074)
chr7 (48-169)||(4672931-4673052)
chr7 (22-174)||(4653722-4653874)
chr7 (32-174)||(4637069-4637211)
chr7 (32-177)||(4783573-4783718)
chr7 (32-177)||(4816002-4816147)
chr7 (40-135)||(4663211-4663306)
chr7 (48-165)||(4711822-4711939)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 18925640 - 18925418
Alignment:
Q  17 tttacatagttgagattatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatac 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18925640 tttatatagttgagattatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacgaggaaaatcgttgtcccaataacgaaacatac 18925541  T
Q  117 ctgtgtcattacttcgtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtcactgctgattttgtatttcatgttttcaag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925540 ctgtgtcattacttcgtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtcactgctgattttgtatttcatgttttcaag 18925441  T
Q  217 gccaagtaactttaaatgatgat 239  Q
    |||||||||||||||||||||||    
T  18925440 gccaagtaactttaaatgatgat 18925418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 4864123 - 4864288
Alignment:
Q  21 catagttgagattatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgt 120  Q
    ||||||| |||| |||| |||||||| ||||||  ||| |||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||    
T  4864123 catagttaagatgatgtttaaaatcacttgatatgctttgtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacataccagt 4864222  T
Q  121 gtcattacttcgtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtc 186  Q
     |||| ||   ||||||||||| | ||||| ||  ||||||||||||||||||||||| |||||||    
T  4864223 atcatcacccggtggaacttgactttcaccgacattgactctataaaccgtctctaacgctttgtc 4864288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 4631124 - 4631275
Alignment:
Q  17 tttacatagttgagattatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatac 116  Q
    |||| |||||| |||| ||||  ||||| | |||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||  ||||||||||    
T  4631124 tttaaatagtttagatgatgtccaaaataacttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatac 4631223  T
Q  117 ctgtgtcattacttcgtggaacttgattatcaccaacgctgactctataaac 168  Q
    |||| |||| | || ||||||||||||| |||||| || |||||||||||||    
T  4631224 ctgtatcataatttggtggaacttgattttcaccagcgttgactctataaac 4631275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 4845879 - 4845753
Alignment:
Q  48 ttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttcgtggaacttgattatc 147  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||  |||||||||||||| |||| |||| || |||||||||| ||    
T  4845879 ttgatacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaacatacctgtatcatcacttggttgaacttgattttc 4845780  T
Q  148 accaacgctgactctataaaccgtctc 174  Q
    ||||||  |||||||||||||| ||||    
T  4845779 accaacattgactctataaaccatctc 4845753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 4697084 - 4696919
Alignment:
Q  21 catagttgagattatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgt 120  Q
    ||||||| |||| |||| |||||||| ||||||  ||| |||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||| ||    
T  4697084 catagttaagatgatgtttaaaatcacttgatatgctttgtggatattgtttctccaagtaacgaggaaaatcattgtcccagttacgaaacataccagt 4696985  T
Q  121 gtcattacttcgtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtc 186  Q
     || |   || |||||||||||||  |||| ||  ||||||||||||||||||||||| |||||||    
T  4696984 atcttggtttggtggaacttgattgccacccacattgactctataaaccgtctctaacgctttgtc 4696919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 4667181 - 4667295
Alignment:
Q  60 gtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttcgtggaacttgattatcaccaacgctgac 159  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| || || | ||   ||||||||||| | ||||||||||||||    
T  4667181 gtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacataccagtatcgtcaccaggtggaacttgactttcaccaacgctgac 4667280  T
Q  160 tctataaaccgtctc 174  Q
    |||||||||||||||    
T  4667281 tctataaaccgtctc 4667295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 4643904 - 4644074
Alignment:
Q  17 tttacatagttgagattatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatac 116  Q
    |||| |||||| |||| ||||  | ||||||||||||| ||||| |||||||||||||||||||||| |||| |||| |||||||||| |||||||||||    
T  4643904 tttaaatagtttagatgatgttcataatcatttgatacgcttagcggatattgtttctccaagtaacgaggataatcattgtcccaattacgaaacatac 4644003  T
Q  117 ctgtgtcattacttcgtggaacttgattatcaccaacgctgactctataaaccgtctctaacactttgtca 187  Q
    |||| || |   || ||||||||||| |   ||||||| |||||||||||||| |||| ||  ||||||||    
T  4644004 ctgtatcttggtttggtggaacttgaattcgaccaacgttgactctataaaccatctccaaagctttgtca 4644074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 4672931 - 4673052
Alignment:
Q  48 ttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttcgtggaacttgattatc 147  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||| |||||||||||| || || | ||   ||||||||||| | ||    
T  4672931 ttgatacactaagtggatattgtttctccaagtaaccatgaaaatcattgtcccaattacgaaacataccagtatcgtcacccggtggaacttgactttc 4673030  T
Q  148 accaacgctgactctataaacc 169  Q
    ||||||| ||||||||||||||    
T  4673031 accaacgttgactctataaacc 4673052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 4653722 - 4653874
Alignment:
Q  22 atagttgagattatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgtg 121  Q
    ||||||||||| || |  ||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||| |||||||| ||| ||     
T  4653722 atagttgagatgatttacaaaatcacttgatacacttagtggatattgtttctctaagtaacgaggataatcgttatcccaattacgaaacaaaccagta 4653821  T
Q  122 tcattacttcgtggaacttgattatcaccaacgctgactctataaaccgtctc 174  Q
    ||     || ||||||||||||| ||||||||| |||| |||||||| |||||    
T  4653822 tctaggtttggtggaacttgattttcaccaacgttgacactataaactgtctc 4653874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 4637069 - 4637211
Alignment:
Q  32 ttatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttc 131  Q
    ||||||||||| ||| ||||||||||   ||| || | |||||||||||||  ||||||||| ||| ||||||  |||||||||||||| |||| ||||     
T  4637069 ttatgtgtaaagtcacttgatacactagatgggtactctttctccaagtaaagaggaaaatcattgccccaattgcgaaacatacctgtatcatcacttg 4637168  T
Q  132 gtggaacttgattatcaccaacgctgactctataaaccgtctc 174  Q
    ||||||||||||| | ||||||| |||||||||||||| ||||    
T  4637169 gtggaacttgattttgaccaacgttgactctataaaccatctc 4637211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 4783718 - 4783573
Alignment:
Q  32 ttatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttc 131  Q
    ||||||||||| ||| ||||||||||   ||| || | |||||||||||||| |||| |||| |||||||||| ||||||||| ||||| || |   ||     
T  4783718 ttatgtgtaaagtcacttgatacactagatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttg 4783619  T
Q  132 gtggaacttgattatcaccaacgctgactctataaaccgtctctaa 177  Q
     |||||||||||| | ||||||| ||||||||||||||||||||||    
T  4783618 ctggaacttgattttgaccaacgttgactctataaaccgtctctaa 4783573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 4816147 - 4816002
Alignment:
Q  32 ttatgtgtaaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttc 131  Q
    ||||||||||| ||| ||||||||||   ||| || | |||||||||||||| |||| |||| |||||||||| ||||||||| ||||| || |   ||     
T  4816147 ttatgtgtaaagtcacttgatacactagatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaacatgcctgtatcttggtttg 4816048  T
Q  132 gtggaacttgattatcaccaacgctgactctataaaccgtctctaa 177  Q
     |||||||||||| | ||||||| ||||||||||||||||||||||    
T  4816047 ctggaacttgattttgaccaacgttgactctataaaccgtctctaa 4816002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 4663211 - 4663306
Alignment:
Q  40 aaaatcatttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttcgtgg 135  Q
    ||||||| ||||||||||| ||||||||| | |||||||||||| |||| |||| || ||||||||||||||||||||||| |||| |||| ||||    
T  4663211 aaaatcacttgatacactttgtggatattctatctccaagtaacgaggagaatcattttcccaataacgaaacatacctgtatcatcactttgtgg 4663306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 4711939 - 4711822
Alignment:
Q  48 ttgatacacttagtggatattgtttctccaagtaacaaggaaaatcgttgtcccaataacgaaacatacctgtgtcattacttcgtggaacttgattatc 147  Q
    ||||||||||| ||||||||| ||| |||| ||||  |||||||||  ||||||||| ||||||||||||||| || |   || ||||||||||||| |     
T  4711939 ttgatacactttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaacatacctgtatcttggtttggtggaacttgattttg 4711840  T
Q  148 accaacgctgactctata 165  Q
    ||||||| ||||||||||    
T  4711839 accaacgttgactctata 4711822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University