View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21043_high_52 (Length: 234)

Name: NF21043_high_52
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21043_high_52
NF21043_high_52
[»] chr4 (7 HSPs)
chr4 (1-216)||(38220431-38220646)
chr4 (76-216)||(38238416-38238556)
chr4 (3-216)||(38243280-38243494)
chr4 (58-216)||(38226869-38227027)
chr4 (58-216)||(38253599-38253757)
chr4 (58-215)||(38248484-38248641)
chr4 (59-211)||(38214447-38214599)
[»] chr6 (2 HSPs)
chr6 (76-197)||(17455117-17455238)
chr6 (61-197)||(17434002-17434138)
[»] chr1 (1 HSPs)
chr1 (103-155)||(21547011-21547063)
[»] chr2 (2 HSPs)
chr2 (101-167)||(11479291-11479357)
chr2 (127-207)||(11485520-11485600)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 38220431 - 38220646
Alignment:
Q  1 ttgtatattttgtgaaccgactgatcttgatctaacttttattgtgcatcgactgcgtgtttcttgatgaatttgtttacctttcaatcatgttctgagt 100  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38220431 ttgtatattttgtgaactgactgatcttgatctaacatttattgtgcatcgactgcgtgtttcttgatgaatttgtttaccttgcaatcatgttctgagt 38220530  T
Q  101 tcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaac 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220531 tcattccttttgaattatctgatagtttcaaagtatcagtaacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaac 38220630  T
Q  201 agtgtatcttaagtag 216  Q
    ||||||||||||||||    
T  38220631 agtgtatcttaagtag 38220646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 38238416 - 38238556
Alignment:
Q  76 tttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataa 175  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  38238416 tttaccttgcagtcatgatctgagttcattccttttgaattatctgatagtttcaaagtatcagtaacatcaagtatatatatcttaacaggcactataa 38238515  T
Q  176 aatcatcccaatcaacccatttaacagtgtatcttaagtag 216  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38238516 aatcatcccaatcaacccatttaacagtgtatcttaagtag 38238556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 38243280 - 38243494
Alignment:
Q  3 gtatattttgtgaaccgactgatcttgatctaacttttattg-tgcatcgactgcgtgtttcttgatgaatttgtttacctttcaatcatgttctgagtt 101  Q
    ||||||||||||||| ||||| |||||||| ||| || |||| ||||| ||||| |||||||||||||||||  |||||||| |||||||| ||  ||||    
T  38243280 gtatattttgtgaactgactggtcttgatccaacattcattgatgcattgactgtgtgtttcttgatgaattcatttaccttgcaatcatgatcaaagtt 38243379  T
Q  102 cattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaaca 201  Q
    | |||||||||| ||||||||| |||||| | |||| || ||||||| || ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  38243380 cgttccttttgagttatctgattgtttcatactatcggtaacatcaattacatatatcttaagaggcactataaaatcatcccaatcaacccatttaaca 38243479  T
Q  202 gtgtatcttaagtag 216  Q
    |||||||||||||||    
T  38243480 gtgtatcttaagtag 38243494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 58 - 216
Target Start/End: Original strand, 38226869 - 38227027
Alignment:
Q  58 tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatata 157  Q
    |||||||| |||||||  |||||||| |||||||| | |||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  38226869 tgtttcttaatgaattcatttaccttgcaatcatggtttgagttcaatccttttgaatcatctgatggtttcaaagtatcagtaacatcaagtatatata 38226968  T
Q  158 tcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtag 216  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  38226969 tcttaacaggcactataaaatcatcccaatcaacccattttacagtgtatcttaggtag 38227027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 58 - 216
Target Start/End: Original strand, 38253599 - 38253757
Alignment:
Q  58 tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatata 157  Q
    |||||||| ||||||||  ||||||| |||||||| |||||||||| | ||||||||| ||||||| |||||||||||||||| ||||||| ||||||||    
T  38253599 tgtttcttaatgaatttacttaccttgcaatcatggtctgagttcaattcttttgaatcatctgatggtttcaaagtatcagtaacatcaattatatata 38253698  T
Q  158 tcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtag 216  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  38253699 tcttaacaggcactataaaatcatcccaatcaacccatttcactgtgtatcttaagtag 38253757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 38248484 - 38248641
Alignment:
Q  58 tgtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatata 157  Q
    |||||||||||||||   |||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||| || |||||||||||| ||||||||    
T  38248484 tgtttcttgatgaatgcatttaccttgcaatcatgatctgatttcattccttttgaatcatctgatagtttcaaactaccagtgacatcaattatatata 38248583  T
Q  158 tcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagta 215  Q
    ||||| | ||||||||||||||||||||||||||||| || || ||| ||||||||||    
T  38248584 tcttaacgggcactataaaatcatcccaatcaacccactttactgtgcatcttaagta 38248641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 38214447 - 38214599
Alignment:
Q  59 gtttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatat 158  Q
    |||||||||||||||  |||||||| |||||||| || ||||||| ||||||||||| ||||||| |||||||| ||||||| ||||||| |||||||||    
T  38214447 gtttcttgatgaattcatttaccttgcaatcatgatccgagttcaatccttttgaatcatctgatggtttcaaactatcagtaacatcaattatatatat 38214546  T
Q  159 cttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatctta 211  Q
    |||  ||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  38214547 cttcacaggcacaataaaatcatcccaatcgacccattttacagtgtatctta 38214599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 17455117 - 17455238
Alignment:
Q  76 tttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataa 175  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||| ||| |||||  ||| |||||||    
T  17455117 tttaccttacaatcatgatctgagttcattccttttgaatcatctgatagtttcaaactatcagtaacatcaattatgtatgtcttaagaggaactataa 17455216  T
Q  176 aatcatcccaatcaacccattt 197  Q
    | ||||||||||||||||||||    
T  17455217 attcatcccaatcaacccattt 17455238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 17434002 - 17434138
Alignment:
Q  61 ttcttgatgaatttgtttacctttcaatcatgttctgagttcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatct 160  Q
    ||||||||||| |  |||||||| |||||||| ||||||||| |||||||||||| || ||||||||| ||| ||||||| ||||||| ||| |||  ||    
T  17434002 ttcttgatgaaatcatttaccttacaatcatgatctgagttcgttccttttgaatcatttgatagttttaaactatcagtaacatcaattatgtatgcct 17434101  T
Q  161 tagcaggcactataaaatcatcccaatcaacccattt 197  Q
    || ||||||||||||||||||||||||||| ||||||    
T  17434102 taacaggcactataaaatcatcccaatcaatccattt 17434138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 21547063 - 21547011
Alignment:
Q  103 attccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatata 155  Q
    |||||||| || ||||||||||| |||||||||||||| ||||||| ||||||    
T  21547063 attcctttagacttatctgatagcttcaaagtatcagtcacatcaaatatata 21547011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 11479357 - 11479291
Alignment:
Q  101 tcattccttttgaattatctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcagg 167  Q
    |||||||||| || |||||||| |  |||||||||||||| ||||||| |||||| |||||| ||||    
T  11479357 tcattcctttggacttatctgaaatcttcaaagtatcagtcacatcaaatatataaatcttaacagg 11479291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 11485600 - 11485520
Alignment:
Q  127 ttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtat 207  Q
    |||||||||||||| ||||||| |||||| |||||   |||||| ||||| |  ||||||| |||||| ||||| ||||||    
T  11485600 ttcaaagtatcagtcacatcaaatatataaatcttgagaggcaccataaacttttcccaattaacccacttaacggtgtat 11485520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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