View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21043_high_53 (Length: 234)
Name: NF21043_high_53
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_high_53 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23696766 - 23696545
Alignment:
| Q |
1 |
taacttccaacacaatattcacagaaagagtgtgaacagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggatt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23696766 |
taacttccaacacatccttcacagaaagagtgtgaacagttttggttttcgaacatttctgcagcaggtttagcttccatgcagatagcacagtaggatt |
23696667 |
T |
|
| Q |
101 |
tttt-caattgagaagaagattcaccttcaacaggtttgaggttagtttcagtatcaacatttgcatgcaccacaggtaattgtatttcatctgcatatt |
199 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23696666 |
tttttcaattgagaagaagattcacattcaacaggtttgaggttagtttcagtatcaacatttgcatgcaccgcaggtaattgtatttcatctgcatatt |
23696567 |
T |
|
| Q |
200 |
cctcgtcaaataatggaaatat |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23696566 |
cctcgtcaaataatggaaatat |
23696545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 23701171 - 23701286
Alignment:
| Q |
4 |
cttccaacacaatattcacagaaagagtgtgaacagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||| || |
|
|
| T |
23701171 |
cttccaacacaatattcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaataggattgtt |
23701270 |
T |
|
| Q |
104 |
tcaattgagaagaaga |
119 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
23701271 |
tcaactgagaagaaga |
23701286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 23694632 - 23694517
Alignment:
| Q |
4 |
cttccaacacaatattcacagaaagagtgtgaacagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttt |
103 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||| |||||||| | ||||| |||||||| |||||||||||||| || |||||||||||||||| || |
|
|
| T |
23694632 |
cttccaagacaatcttcacagaaagaatgtgaacatttttggttctggaacatttcttcaacgggtttagcttccatacaaatagcacagtaggattgtt |
23694533 |
T |
|
| Q |
104 |
tcaattgagaagaaga |
119 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
23694532 |
tcaactgagaagaaga |
23694517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University