View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_10 (Length: 550)
Name: NF21043_low_10
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Original strand, 1030280 - 1030802
Alignment:
| Q |
18 |
agtggaagggtttggaacctattagccgatggagctgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttgaggaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030280 |
agtggaagggtttggaacctattagccgatggagctgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttgaggaaa |
1030379 |
T |
|
| Q |
118 |
ttgtatctaaagaaaatgaggtttcaaaggaagatgcagttaggtggatcagggcattagaaaggtgcggtaaatatcacattgaagcatggtcttgaga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030380 |
ttgtatctaaagaaaatgaggtttcaaaggaagatgcagttaggtggattagggcattagaaaggtgcggtaaatatcacattgaagcatggtcttgaga |
1030479 |
T |
|
| Q |
218 |
gttttattttgggtcagatagcaagtttgggtcctctatagctgttttacggtgcaactgtctgcagacggttgtagagggtccgggttcgtcaaggagg |
317 |
Q |
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| T |
1030480 |
gttttattttgggtcagatagcaagtttgggtcctctatagccattttacggggcaactgtctgcagacggttgtagagggtccgggttcgtcaaggagg |
1030579 |
T |
|
| Q |
318 |
tccaatcatacagttttttctaaagtctaatacggttgcatggatcaaattggtgcaaattttgtggttctaataaaattggacatttgatagcgaaatg |
417 |
Q |
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| T |
1030580 |
tccaatcatacagttttttctaaagtctaatacggttgcatggatcaaattggtgcaaa--ttgtggttc---taaaattggacatatgatagcgaaatg |
1030674 |
T |
|
| Q |
418 |
ttaggcaatatttattggaaattatttagattattaatacatgtagttgccttattattctatttatacattgtaaatacttggttccttggtttatgaa |
517 |
Q |
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| T |
1030675 |
ttaggcaatatttattggaaattatttagattattaatacatgtagttgccttattattctatttatacattgtaaatacttggttccttggtttatgaa |
1030774 |
T |
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| Q |
518 |
gaatgttagaatctgtgtgatattcttc |
545 |
Q |
| |
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||||||| ||||||||||||| |||||| |
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| T |
1030775 |
gaatgttggaatctgtgtgattttcttc |
1030802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 40832873 - 40833072
Alignment:
| Q |
18 |
agtggaagggtttggaacctattagccgatggagctgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttgaggaaa |
117 |
Q |
| |
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|||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40832873 |
agtggaagggtttggaacttattagctgagggagcttctgtttatatagcaggttcattaaccaaaatgcctacagatgtaacatcagcttttgaggaaa |
40832972 |
T |
|
| Q |
118 |
ttgtatctaaagaaaatgaggtttcaaaggaagatgcagttaggtggatcagggcattagaaaggtgcggtaaatatcacattgaagcatggtcttgaga |
217 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
40832973 |
ttgtatctaaagaaaatgatgtttcaaaagaagatgcagttagatggattagggcattagaaaagtgtggtaaatatcacattgaagcatggtcttgaga |
40833072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 312 - 531
Target Start/End: Original strand, 40833124 - 40833351
Alignment:
| Q |
312 |
aggaggtccaatcatacagttttttctaaagtctaatacggttgcatggatcaaattggtgcaaattttgtggttctaataaaattggacatttgatagc |
411 |
Q |
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|||||||||||| |||||||||||| ||||||||| || | | | ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40833124 |
aggaggtccaataatacagttttttttaaagtctagtatgatggaatgtatcaaattggtgcaaattttgtggttc---caaaattggacatttgatagg |
40833220 |
T |
|
| Q |
412 |
gaaatgttaggcaatatttattggaaattatttagattattaatacatgtagtt-----------gccttattattctatttatacattgtaaatacttg |
500 |
Q |
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| ||||||| | |||||||||||||||||||||||| ||| | ||||| ||| || |||||||||||||||||||||||||||||||| |
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| T |
40833221 |
ggtatgttagccggtatttattggaaattatttagattgttatttcatgtggtttaagaaagtgagctttattattctatttatacattgtaaatacttg |
40833320 |
T |
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| Q |
501 |
gttccttggtttatgaagaatgttagaatct |
531 |
Q |
| |
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||||||||| || |||||||||| |||||| |
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| T |
40833321 |
cttccttggtctacgaagaatgttggaatct |
40833351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 46553870 - 46554249
Alignment:
| Q |
18 |
agtggaagggtttggaacctattagccgatggagctgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttgaggaaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46553870 |
agtggaagggtttggaacctattagccgatggagctgctgtttatatagcaggttcatcaaccaaaatgcctacggatgtaacatcagcttttgaggaaa |
46553969 |
T |
|
| Q |
118 |
ttgtatctaaagaaaatgaggtttcaaaggaagatgcagttaggtggatcagggcattagaaaggtgcggtaaatatcacattgaagcatggtcttgaga |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46553970 |
ttgtatctaaagaaaatgaggtttcaaaggaagatgcagttaggtggattagggcattagaaaggtgcggtaaatatcacattgaagcatggtcttgaga |
46554069 |
T |
|
| Q |
218 |
gttttattttgggtcagatagcaagtttgggtcctctatagctgttttacggtgcaactgtctgcagacggttgtagagggtccgggttcgtcaaggagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554070 |
gttttattttgggtcagatagcaagtttgggtcctctatagccattttacggagcaactgtctgcagacggttgtagagggtccgggttcgtcaaggagg |
46554169 |
T |
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| Q |
318 |
tccaatcatacagttttttctaaagtctaatacggttgcatggatcaaattggtgcaaattttgtggttctaataaaatt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554170 |
tccaatcatacagttttttctaaagtctaatacggttgcatggatcaaattggtgcaaattttgtggttctaataaaatt |
46554249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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