View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_11 (Length: 529)
Name: NF21043_low_11
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Original strand, 26017036 - 26017534
Alignment:
| Q |
16 |
atgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgttactctgcttctcttgatcttcatgg |
115 |
Q |
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| T |
26017036 |
atgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgttactctgcttctcttgatcttcatgg |
26017135 |
T |
|
| Q |
116 |
acaatctaaacaggtaacttcatgggttgcatggatttgttcatcnnnnnnnnnnnnnnn--atactatatagatttattaaacaaatttggaaaggtct |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26017136 |
acaatctaaacaggtaacttcatgggttgcatggatttgttcatctttttttttttttttttatactatatagatttattaaacaaatttggaaaggtct |
26017235 |
T |
|
| Q |
214 |
tattgaatttatggttaatgggatttacaaaatggatgcatgtgcaaggaccaatatatagtctaagatttttgtttgtgattggtacaggcnnnnnnng |
313 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26017236 |
tattaaatttatggttaatgggatttacaaaatggatacatgtgtaaggaccaatatatagtctaagatttttgtttgtgattggtacaggcattttttg |
26017335 |
T |
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| Q |
314 |
gcatatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtga |
413 |
Q |
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| T |
26017336 |
gcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtga |
26017435 |
T |
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| Q |
414 |
tattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttattag |
512 |
Q |
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| T |
26017436 |
tattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggctcttgctgtgtaacagcatttattag |
26017534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 313 - 512
Target Start/End: Original strand, 26002523 - 26002722
Alignment:
| Q |
313 |
ggcatatttgatggacatggaggtacaaaagcttcagaatttgctgcacgtaacttggaaaagaatgtgttagaggaagtaatcagaagagatgaaagtg |
412 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
26002523 |
ggcatatttgatggacatggaggtacaaaagcttcggaattcgcggcacagaacttggaaaagaatgtgttagaagaagtaatcagaagagatgagagtg |
26002622 |
T |
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| Q |
413 |
atattgaggaagcagtgaagcatggttacctcaaaacagattcagatttcttaaaagaggatcttaatggtggctcttgctgcgtaacagcatttattag |
512 |
Q |
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| T |
26002623 |
atattgaggaagcagtgaaacatggttacctcaaaacagattcagatttcttaaaagaagatcttaatggtggttcttgctgtgtaacagcattaattag |
26002722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 26001993 - 26002114
Alignment:
| Q |
16 |
atgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgttactctgcttctcttgatcttcatgg |
115 |
Q |
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||||||||||||| || |||||||| ||||||||||||||||||| |||| | || || ||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
26001993 |
atgttgttgaggtggagggagatggattttctgtgtattgtaagaaaggaggtagaaaacatatggaggatcgttattctgcttctgttgatcttcatgg |
26002092 |
T |
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| Q |
116 |
acaatctaaacaggtaacttca |
137 |
Q |
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|||| ||||||||||||||| |
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| T |
26002093 |
tgaatcaaaacaggtaacttca |
26002114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 30373232 - 30373307
Alignment:
| Q |
16 |
atgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgtta |
91 |
Q |
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| T |
30373232 |
atgttgttgaggcggagggagatgggtattctgtttattgtaagagagggaggagggagtatatggaagatcgtta |
30373307 |
T |
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