View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_12 (Length: 527)
Name: NF21043_low_12
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 27175502 - 27175161
Alignment:
| Q |
17 |
aacattgtcttcaaatatgtttttgcaacccttttcaataagttgtggaacactagacaaattttaatcaatgtcaagtcaagaaaaaataaaacattca |
116 |
Q |
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| T |
27175502 |
aacattgtctgcaaatatgtttttgaagcccttttcaataagttgtggaacactagacaaattttgatcaatgtcaag-----aacaaataaaacattca |
27175408 |
T |
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| Q |
117 |
taaatatatcacatatataccagataagctt-caatagcaacagtccaatttcccttgactgagttgaaatcaccattttcagtttttactttcgaaaca |
215 |
Q |
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| T |
27175407 |
taaatatatcacata----ccagataagctttcaatagcaacagtccaatttcccttgactgagttgaaatcaccattttcagtttttactttcgaaaca |
27175312 |
T |
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| Q |
216 |
acgatt-ttttcaacctctttaaagagcttatgatcattggtcatatgatttgtgcatccgctgtcaattaaccatgagtcacacaaactattgcttgta |
314 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |||| |||||||||||||||||| |
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| T |
27175311 |
acgatttttttcaacctctttaaagagcttatgatcattggtcatgtgatttgtgcatctgctgtcaagtaaccacgagt--cacaaactattgcttgta |
27175214 |
T |
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| Q |
315 |
gcaaaacatgttgcaacaaaaagttgatcttcttcttgatgctccatggatat |
367 |
Q |
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| T |
27175213 |
gcaaaacatgttgcaacaaaaagttgatcttcttcttgatgctccatggatat |
27175161 |
T |
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