View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_14 (Length: 468)
Name: NF21043_low_14
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 45593718 - 45594159
Alignment:
| Q |
19 |
aacacgcacttagtcacatctaccatcaaggagattcaagaaattgtcggtatgtcccaggaaacctatttcatcgggcatacgcagtaggtgcttcagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
45593718 |
aacacgcacttagtcacatctaccatcaaggagattcaagaaattgtcagtatgtcccaggaaacctatttcatcaggcatgcgcagtaggtgcttcagt |
45593817 |
T |
|
| Q |
119 |
gcagaatcagaagtatcaagaaattcataatttcctgaatctgaaccagatatatcatcttcaatcttcagtttgtagctactggcattttgttcctgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45593818 |
gcagaatcagaagtatcaagaaattcataatttcctgaatctgaaccagatatatcatcttcaagcttcagtttgtagctactggcattttgttcctgaa |
45593917 |
T |
|
| Q |
219 |
tcaggttgacatcttcaagctttggtgttgacactttcaggctttgtgttccgttgtttttcacctgcaatgagacatctgaacatgattcctccaatga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45593918 |
tcaggttgacatcttcaagctttggtgttgacactttcaggctttgtgttcggttgtttttcacctgcaatgagacatctgaacatgattcctccaatga |
45594017 |
T |
|
| Q |
319 |
gacgatgctttgacacactactcctgcacgaaatttctctccaacatcagaatgccaaagttgaagaaagtaatcagggtatgttttagtcgtagagcct |
418 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45594018 |
gacgatgctttgacacactactcctgcacggaatttgtctccaacatcagaatgccaaagttgaagaaagtaatcagggtatgttttagtcgtagagcct |
45594117 |
T |
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| Q |
419 |
gaattaagcaaagtggactccaacgacagcctcgtctctgct |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45594118 |
gaattaagcaaagtggactccaacgacagcctcgtctctgct |
45594159 |
T |
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