View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_16 (Length: 459)
Name: NF21043_low_16
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 30334712 - 30335163
Alignment:
| Q |
17 |
actaacagttctaaaaagaacaatattcaaaggaaacatttgcatgaaatatttaatccatgcatatgaacttatcggttagtcattctctgtttctatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30334712 |
actaacagttctaaaaagaacaatattcaaaggaaacatttgcatgaaatatttaatccatgcatatgaacttatcggttagtcattctctgtttctatt |
30334811 |
T |
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| Q |
117 |
ataaccaatagtttgtataggcatcatgataaggatcaaaccattccaaatcaaatgaagaattttcaacctttaccaaccttattataaaagctccaaa |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30334812 |
ataaccaatagtttgtatagacatcatgataaggatcaaaccattccaaatcaaatgaagaattttcaacctttaccaaccttattataaaagctccaaa |
30334911 |
T |
|
| Q |
217 |
tcagatttcatcttgtcttgttatatccatattttagctttgacaatcgtgtaatatcaataatagcaacaataatatttgttgctctatacgaggaagt |
316 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30334912 |
tcagatttcatcttgtcgtgttatatccatattttagctttgacaatcgtg-aatatcaataatagcaacaataattcttgttgctctatacgaggaagt |
30335010 |
T |
|
| Q |
317 |
acaccttatatttatacaaaatctcaaaatgaagagaagataaacaattgtctaagatgtttc----------ccctgtgaacggtgacgtggcaatttg |
406 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||||| |
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| T |
30335011 |
acaccttatatttatacaaaatcgcaaaatgaagagaagataaacaattgtcgaagatgtttcatctaagacaacctgtgaacgatgacgtgacaatttg |
30335110 |
T |
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| Q |
407 |
caatgtgtatccacattggttttatggttttgacggtgaaaatttatttggtt |
459 |
Q |
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| T |
30335111 |
caatgcgtatccacattggcttaacggttttgacggtggaaatttatttggtt |
30335163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 37499356 - 37499319
Alignment:
| Q |
383 |
tgtgaacggtgacgtggcaatttgcaatgtgtatccac |
420 |
Q |
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| T |
37499356 |
tgtgaacggtgacgtgacaacttgcaatgtgtatccac |
37499319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 4265160 - 4265123
Alignment:
| Q |
383 |
tgtgaacggtgacgtggcaatttgcaatgtgtatccac |
420 |
Q |
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| T |
4265160 |
tgtgaacggtgacgtgacaacttgcaatgtgtatccac |
4265123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 8905791 - 8905828
Alignment:
| Q |
383 |
tgtgaacggtgacgtggcaatttgcaatgtgtatccac |
420 |
Q |
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| T |
8905791 |
tgtgaacggtgacgtgacaacttgcaatgtgtatccac |
8905828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 3659136 - 3659099
Alignment:
| Q |
383 |
tgtgaacggtgacgtggcaatttgcaatgtgtatccac |
420 |
Q |
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| T |
3659136 |
tgtgaacggtgacgtgacaacttgcaatgtgtatccac |
3659099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 5367599 - 5367562
Alignment:
| Q |
383 |
tgtgaacggtgacgtggcaatttgcaatgtgtatccac |
420 |
Q |
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| T |
5367599 |
tgtgaacggtgacgtgacaacttgcaatgtgtatccac |
5367562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 10468664 - 10468627
Alignment:
| Q |
383 |
tgtgaacggtgacgtggcaatttgcaatgtgtatccac |
420 |
Q |
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| T |
10468664 |
tgtgaacggtgacgtgacaacttgcaatgtgtatccac |
10468627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 12585342 - 12585305
Alignment:
| Q |
383 |
tgtgaacggtgacgtggcaatttgcaatgtgtatccac |
420 |
Q |
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| T |
12585342 |
tgtgaacggtgacgtgacaacttgcaatgtgtatccac |
12585305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 27864951 - 27864988
Alignment:
| Q |
383 |
tgtgaacggtgacgtggcaatttgcaatgtgtatccac |
420 |
Q |
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| T |
27864951 |
tgtgaacggtgacgtgacaacttgcaatgtgtatccac |
27864988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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