View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21043_low_17 (Length: 450)

Name: NF21043_low_17
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21043_low_17
NF21043_low_17
[»] chr4 (8 HSPs)
chr4 (11-434)||(39521722-39522146)
chr4 (127-434)||(39544515-39544820)
chr4 (127-433)||(39576368-39576675)
chr4 (127-433)||(39580897-39581216)
chr4 (298-428)||(39525225-39525356)
chr4 (294-433)||(39511477-39511617)
chr4 (128-204)||(39525453-39525529)
chr4 (127-204)||(39581850-39581927)
[»] chr7 (1 HSPs)
chr7 (378-434)||(3331509-3331565)


Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 39522146 - 39521722
Alignment:
Q  11 atcatcaatttcataacttnnnnnnnntcatcaaacaaacacaattttcctctctcactatgtcaacctttcacttccacacaattcaacgctctatctt 110  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39522146 atcatcaatttcataacttaaaaaaaatcatcaaacaaacacaattttcctctctcaccatgtcaacctttcacttccacacaattcaacgctctatctt 39522047  T
Q  111 tctacttgcnnnnnnncttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgac 210  Q
    ||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39522046 tctccttgctttttttcttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatatcgac 39521947  T
Q  211 gtggatgaaaataacaaccattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccag 310  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39521946 gtgaatgaaaataacaacctttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaaagtaacaagtcaatcaccag 39521847  T
Q  311 tgtcttcacctctcaaccaaacagcaagaattttcctttccaa-tcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcattt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  39521846 tgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaagcaacacttacatggtacgtttccattt 39521747  T
Q  410 cttttcattctcttcaccaactaac 434  Q
    |||||||||||||||||||||||||    
T  39521746 cttttcattctcttcaccaactaac 39521722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 127 - 434
Target Start/End: Complemental strand, 39544820 - 39544515
Alignment:
Q  127 cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca 226  Q
    ||||||||| ||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||    
T  39544820 cttcaattcgcatcattacaatttccctcactcggatacgatcaccaagacacatacttcatcaattgcggatcagatattgacgtgaatgaaaataaca 39544721  T
Q  227 accattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccagtgtcttcacctctcaa 326  Q
    ||| |||||||||||||||||||| | ||||||| |||| |   |||||  ||||   |||||| |||||||||||||||||||||| |||||||||| |    
T  39544720 acctttatattggtgaatcaaaccctacttacccaaaaacaagtttcagaaaaag---ctccaaagtaacaagtcaatcaccagtgttttcacctctcta 39544624  T
Q  327 ccaaacagcaagaattttcctttcc-aatcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttcttttcattctcttca 425  Q
    |||||||||||| || |||| |||| | ||||||||||||||    ||| | ||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  39544623 ccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtatgtttccatttcttttcattctcttca 39544524  T
Q  426 ccaactaac 434  Q
    |||||||||    
T  39544523 ccaactaac 39544515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 127 - 433
Target Start/End: Complemental strand, 39576675 - 39576368
Alignment:
Q  127 cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca 226  Q
    ||||||||||||||| |||| |||||  ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| |    
T  39576675 cttcaattctcatcactacacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataaga 39576576  T
Q  227 accattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccagtgtcttcacctctcaa 326  Q
    | | |||||||||||||||||||||||||||||| ||||||| ||||||| |||| |  ||||  | ||| | || |||| ||||||||||||||||  |    
T  39576575 atctttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaagaagttccatagaaaccaatccatcatcagtgtcttcacctcttta 39576476  T
Q  327 ccaaacagcaagaattttcctttc-caatcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttcttttcattctcttca 425  Q
    |||||||||||||||||||| |||  |||| ||||| |||||    ||| | |||||||||||||| ||||||||||| | |||||||||||||||||||    
T  39576475 ccaaacagcaagaattttccattctgaatcctcctacgaattttctaccataccaaacaacacttatatggtacgtttccgtttcttttcattctcttca 39576376  T
Q  426 ccaactaa 433  Q
    ||||||||    
T  39576375 ccaactaa 39576368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 127 - 433
Target Start/End: Complemental strand, 39581216 - 39580897
Alignment:
Q  127 cttcaattctcatcattacaattcccctcactcggat---acgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaata 223  Q
    |||||||||||||||||||||||  |||| |||||||   |  |||| ||| ||||||||||||||||||| ||||||||| | || ||   ||||| ||    
T  39581216 cttcaattctcatcattacaattttcctcgctcggattatataatccccaacacacatacttcatcaattgcggatcagattttgatgttactgaaagta 39581117  T
Q  224 acaaccattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccag---tgtc------ 314  Q
    |||||  |||||||||||||||||||| | |||| ||||||| | | |||||| ||||   |||||| ||||||||||||||| ||    | ||          
T  39581116 acaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaag---ctccaaagtaacaagtcaatcatcatcactatcaacacc 39581020  T
Q  315 ---ttcacctctcaaccaaacagcaagaattttcctttccaa-tcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttc 410  Q
       |||||||||| ||||||||||||  || |||| |||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  39581019 actttcacctctctaccaaacagcaattatattcccttccaaatctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttccatttc 39580920  T
Q  411 ttttcattctcttcaccaactaa 433  Q
    |||  |||||||| |||||||||    
T  39580919 tttctattctctttaccaactaa 39580897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 298 - 428
Target Start/End: Complemental strand, 39525356 - 39525225
Alignment:
Q  298 agtcaatcaccagtgtcttcacctctcaaccaaacagcaagaattttcctttcc-aatcttcctatgaattcaaaaccgttccaaacaacacttacatgg 396  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| || || | |||| ||||||  || || ||||||||||| ||||||||||| |||||||    
T  39525356 agtcaatcatcagtgccttcacctctctaccaaacagcaaggatatttcattccgaatctttatacgagttcaaaaccgtaccaaacaacacctacatgg 39525257  T
Q  397 tacgttttcatttcttttcattctcttcacca 428  Q
    ||||||| ||||||||||||||||||||||||    
T  39525256 tacgtttccatttcttttcattctcttcacca 39525225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 433
Target Start/End: Complemental strand, 39511617 - 39511477
Alignment:
Q  294 aacaagtcaatcaccagtgtcttcacctctcaaccaaacagcaagaattttcctttcc-aatcttcctatgaattcaaaaccgttccaaacaacacttac 392  Q
    ||||| ||||||| ||||  ||||| ||||| ||||||| ||||| ||||||| |||| ||||||  || |||||||||||| | ||||||||||| ||     
T  39511617 aacaaatcaatcatcagttccttcatctctctaccaaactgcaaggattttccgttccgaatcttggtacgaattcaaaaccatcccaaacaacacctat 39511518  T
Q  393 atggtacgttttcatttcttttcattctcttcaccaactaa 433  Q
    ||||||||||| |||||| ||||||||||| ||||||||||    
T  39511517 atggtacgtttccatttcctttcattctctacaccaactaa 39511477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 39525529 - 39525453
Alignment:
Q  128 ttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat 204  Q
    ||||||||||||||||| | |||||||| ||||||||||||   ||||||| ||||||||||| |||||||||||||    
T  39525529 ttcaattctcatcattatacttcccctcgctcggatacgatgaacaagacatatacttcatcagttgtggatcagat 39525453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 39581927 - 39581850
Alignment:
Q  127 cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat 204  Q
    |||||||||||||||||||| ||| ||||||| |||||||||   ||||||| ||||||||||| |||||||| ||||    
T  39581927 cttcaattctcatcattacagttcgcctcacttggatacgatgaccaagacatatacttcatcagttgtggataagat 39581850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 378 - 434
Target Start/End: Original strand, 3331509 - 3331565
Alignment:
Q  378 ccaaacaacacttacatggtacgttttcatttcttttcattctcttcaccaactaac 434  Q
    ||||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||    
T  3331509 ccaaacaacacctacatggtacgtttccatttcctttcattctcttcaccaattaac 3331565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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