View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_18 (Length: 432)
Name: NF21043_low_18
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 94 - 410
Target Start/End: Complemental strand, 18246509 - 18246193
Alignment:
| Q |
94 |
atgcatatggtatatgaaaaccttggatctctctctatcaacacaaactatgttgttgtttcaagtttagacaaagagagtaaaaatagctatgcctata |
193 |
Q |
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| T |
18246509 |
atgcatatggtatatgcagaccttggatctctctctatcaacacaaactatggtgttgtttcaagtttagacaaagagagtaaaaatagctatgccttta |
18246410 |
T |
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| Q |
194 |
agagctttgtgatggagaatagtagtgtctttccatttatgagtgagtgtctttccaaaagatatgaagaaaataacatggatgatgatatggaaggaaa |
293 |
Q |
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| T |
18246409 |
agagctttgtgatggagaatggtagtgtctttccatttatgagtgagtgtctttccaaaagatatgaagaacataacatggatgatgatatggaaggaaa |
18246310 |
T |
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| Q |
294 |
aggttcttattggagtgaggaaggtgaaaatagtgagagaataaaccataataacactaactttaatgatgagttagagaaccctaatggaagtggcaaa |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18246309 |
aggttcttattggagtgaggaaggtgaaaatagtgagagaataaaccataataacactaacttcaatgatgagttagagaaccctaatggaagtggcaaa |
18246210 |
T |
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| Q |
394 |
gaggaagataatggtca |
410 |
Q |
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| T |
18246209 |
gaggaagataatggtca |
18246193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 18246583 - 18246552
Alignment:
| Q |
17 |
atgaactcatgatctcttcacaagaaaaccaa |
48 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18246583 |
atgaactcatgatctcttcacaagaaaaccaa |
18246552 |
T |
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