View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_19 (Length: 420)
Name: NF21043_low_19
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 29275061 - 29274669
Alignment:
| Q |
18 |
aaaagaatgaagagttttttctttaaaaaatatataagatacttacaaattgaacgggtccaataccatcagaattagaaagatcaagcaagtgttccat |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
29275061 |
aaaagaattaagagttttttctttaaaaaatatataagatacttacaaattgaacgggtccaataccatcggaattagaaagatcaagcaagtgtttcat |
29274962 |
T |
|
| Q |
118 |
gttcgaagtcctagggtgatgcaaccacatacaaccatccataaactgcacgccattggcttcacaagcttctaagatcaaatcaagctctgccacatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29274961 |
gttcgaagtcctagggtgatgcaaccacatacaaccatccataaactgcacgccattggcctcacaagcttctaagatcaaatcaagctctgccacatca |
29274862 |
T |
|
| Q |
218 |
agtgctgccggcttctccaccaacacatgcttcttcttattcgcggcagcaaccgcccacctcacgtgcagactagtcgggagaggaatgtacactgcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
29274861 |
agtgctgccggcttctccaccaacacatgcttcttcttattcgcagcagcaaccgcccacctcacgtgcagactcgttgggagaggaatgtacactgcat |
29274762 |
T |
|
| Q |
318 |
ccacacctgaatcttccacaacctcatcatagctaccatagattcttacgctggctggtaaactgttttcgactgcaaattttgctgcctttg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29274761 |
ccacacctgaatcttccacaacctcatcatagctaccatagattcttacgctggctggtaaactgttttcgactgcaaattttgctgcctttg |
29274669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 24579200 - 24579139
Alignment:
| Q |
128 |
ctagggtgatgcaaccacatacaaccatccataaactgcacgccattggcttcacaagcttc |
189 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||| |
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| T |
24579200 |
ctagggtgatgcaaccacattgaaccatccataaactgcactccattagtctcacaagcttc |
24579139 |
T |
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