View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_25 (Length: 379)
Name: NF21043_low_25
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 37271466 - 37271134
Alignment:
| Q |
19 |
acaccctgctcatcgatcagttgcgctagacctcggtttcttatttgtgataaaagaaagagtaaagtacctgatatcaattaaaaattcattttaataa |
118 |
Q |
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| T |
37271466 |
acaccctgctcatcgatcagttgcgctagacctcagtttcttatttgtgataaaagaaagagtaaagtacctgatatcaattaaaaattcattttaataa |
37271367 |
T |
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| Q |
119 |
tattgtacttttctttttgaaagaataatattatacttatacataaccttttgacgaatatatgttgaaaaaggccttagaatctccgtaccaaccacta |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37271366 |
tattgtacttttctttttgaaagaataatattgtacttatacataaccttttgacgaatatatgttgaaaaaggccttagaatctccgtaccaaccacta |
37271267 |
T |
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| Q |
219 |
gattatatatatgattaatgattttattggttacttttgtttggtgtagtagaatagaattattgacaaaatattgatacttttgcttaatcctactata |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37271266 |
gattatatatatgattaatgattttattggttacttttgcttggtgtcgcagaatagaattattgacaaaatattgatacttttgcttaa---tactata |
37271170 |
T |
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| Q |
319 |
ttgtggataagtttctgatagtggagcactaagtag |
354 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37271169 |
ttgtggataagtttctgatagtggagcactaagtag |
37271134 |
T |
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