View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21043_low_28 (Length: 357)
Name: NF21043_low_28
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 15835999 - 15835648
Alignment:
| Q |
1 |
aacaatgtctttgtcgatcaaatggtggacaacttcaattctctgccaagtaaccgaaacccactgatggggttcaccgagaacatgtcaccgacatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15835999 |
aacaatgtctttgtcgatcaaatggtggacaacttcaattctctggcaagtaaccgaaacccactgatggggttcaccgagaacatgtcaccgacatttc |
15835900 |
T |
|
| Q |
101 |
tctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaactagcatggtcccataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15835899 |
tctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaactagcatggtcccataa |
15835800 |
T |
|
| Q |
201 |
cccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15835799 |
cccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcat |
15835700 |
T |
|
| Q |
301 |
gaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15835699 |
gaaaatcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttg |
15835648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 352
Target Start/End: Complemental strand, 19796757 - 19796410
Alignment:
| Q |
5 |
atgtctttgtcgatcaaatggtggacaacttcaattctctgccaagtaaccgaaacccactgatggggttcaccgagaacatgtcaccgacatttctctc |
104 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||||||| || ||||||||||||| ||||||||| || |||||||||||||| || |||||||| |
|
|
| T |
19796757 |
atgtcttcctcgatcaaatggtcgccaacttcaattctcttggtagaaaccgaaacccaccgatggggttgacagagaacatgtcaccaacgtttctctc |
19796658 |
T |
|
| Q |
105 |
caccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactcaaactagcatggtcccataaccca |
204 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||| || |||||||| ||||| |
|
|
| T |
19796657 |
caccggtaacccttgcctcgatttcttcttccatgttgttcctgatactccttctgaaacactcgttgagagactcaaacttgcttggtcccaaaaccct |
19796558 |
T |
|
| Q |
205 |
ctcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaa |
304 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
19796557 |
ctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccgctctctggtttcatgaaa |
19796458 |
T |
|
| Q |
305 |
atcaccctaaaaccctagctaccaatgtttcttcattcgctgcctttg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||| ||||| |
|
|
| T |
19796457 |
atcaccctaaaaccctagctaccaatgttccttctctcgctgactttg |
19796410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 82 - 324
Target Start/End: Complemental strand, 47713732 - 47713490
Alignment:
| Q |
82 |
aacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgatactccctctgaaacacttgtcgagagactca |
181 |
Q |
| |
|
||||||||||| |||| |||| | || || |||||||| ||||| ||||||||||||||||||||||| |||||| ||||||| || || |||| |
|
|
| T |
47713732 |
aacatgtcaccaacatatctcactactggcaacccatgtcttgacttcttcttccatgttgtccccgacactccccctgaaactctcctccgacgacttc |
47713633 |
T |
|
| Q |
182 |
aactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtaccggcaagtccaataaagaaggcttctacgc |
281 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||| || ||||| |||||||| |
|
|
| T |
47713632 |
aattagcatggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgc |
47713533 |
T |
|
| Q |
282 |
tgctgctctctggttgcatgaaaatcaccctaaaaccctagct |
324 |
Q |
| |
|
|||||||| ||||| || | | |||||||||||||||||| |
|
|
| T |
47713532 |
cgctgctctttggtttcaccactaccaccctaaaaccctagct |
47713490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University