View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_29 (Length: 347)
Name: NF21043_low_29
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 90 - 258
Target Start/End: Complemental strand, 552847 - 552679
Alignment:
| Q |
90 |
aatatgcattaggggtttattaaacccttttcttctattttatgcaaatttttgtttgttctacgatatatgtaagagaataagagatagtgtagacctg |
189 |
Q |
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| T |
552847 |
aatatgcattaggggtttattaaacccttttcttctattttatgcaaatttttgtttgttctacgatatatgtaagagaataagagatagtgtagacctg |
552748 |
T |
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| Q |
190 |
catgtgatttgaaatccccaacatcatttactgaactgaactaattaattcaccactcaattatatcaa |
258 |
Q |
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| T |
552747 |
catgtgatttgaaatccccaacatcatttactgaactgaactaattaattcaccactcaattatatcaa |
552679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 553226 - 553149
Alignment:
| Q |
19 |
ctttgttggagtataaactccgaaatgtaagttctttattgttttcagatgagaaattaatttc-ttttataaatatg |
95 |
Q |
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| T |
553226 |
ctttgttggagtataaactccgaaatgtaagttctttattgttttcagatgagaaattaatttctttttataaatatg |
553149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 552623 - 552566
Alignment:
| Q |
279 |
ttctatggtttggtgttaatattattctgcaaatttaattcttgattgtctctttcat |
336 |
Q |
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| T |
552623 |
ttctatggtttggtgttaatattattctgcaaatttaattcttgattgtctctttcat |
552566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 546550 - 546489
Alignment:
| Q |
163 |
aagagaataagagatagtgtagacctgcatgtgatttgaaatccccaacatcatttactgaa |
224 |
Q |
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| T |
546550 |
aagagaataagatatagtgtagaccagcatgtgatttgaaatcccgaatatcatttgctgaa |
546489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 51114421 - 51114477
Alignment:
| Q |
281 |
ctatggtttggtgttaatattattc---tgcaaatttaattcttgattgtctctttc |
334 |
Q |
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| T |
51114421 |
ctatggtttggtgttaatattattctagtacaaatttaattcttgattatctctttc |
51114477 |
T |
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