View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21043_low_30 (Length: 343)
Name: NF21043_low_30
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 34977232 - 34976897
Alignment:
| Q |
10 |
attatactggaattttgcttgatggaaccaaatttgactcgagccgtgataggggtaccactttcaaatttaagcttggtcaaggtaatatttaactttc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34977232 |
attatactggaattttgcttgatggaaccaaatttgactcgagccgtgataggggtaccactttcaagtttaagcttggtcaaggtaatatttaactttc |
34977133 |
T |
|
| Q |
110 |
tgttttcctcttgtaaattttgtcgaggtataaaatgatgaatattcaatgtttttaatcatgttgctgtgtatgaggaggaaatgaactatacaatgat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977132 |
tgttttcctcttgtaaattttgtcgaggtataaaatgatgaatattcaatgtttttaatcatgttgctgtgtatgaggaggaaatgaactatacaatgat |
34977033 |
T |
|
| Q |
210 |
agtatcatattaaaatagatcttttatttacacaaatgtgatttttgta-----------------tatcgtacaaacactttagattgaagatatgtct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
34977032 |
agtatcatattaaaatagatcttttatttacacaaatgtgatttttgtatattgtattggttaagttatcgtacagacactttagattgaagatatgtct |
34976933 |
T |
|
| Q |
293 |
gggtgattgatatgtgtgttacaattattttcattg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34976932 |
gggtgattgatatgtgtgttacaattattttcattg |
34976897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University