View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_32 (Length: 335)
Name: NF21043_low_32
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 319
Target Start/End: Original strand, 13849877 - 13850194
Alignment:
| Q |
7 |
caatgaattaaccagatcctgaaaagtatcagaagtaataataattatggatattacaataaaactagaaaaataaatttcaaacacttgacataattaa |
106 |
Q |
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| T |
13849877 |
caatgaattaaccagatcctgaaaagtatccgaagtaataataattatggatattacaataaaactagaaaaataaatttcaaacacttgacataattaa |
13849976 |
T |
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| Q |
107 |
tacctcaaaacgttctttttcttccgtaagcttattaatcacttcattttcagtaaaattagcaggaagctccagtttagttttcttttccaatgaatta |
206 |
Q |
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| T |
13849977 |
tacctcaaaacgttctttttcttccgtaagcttattaatcacttcattttcagtaaaattagcaggaagctccagtttagttttcttttccaatgaacta |
13850076 |
T |
|
| Q |
207 |
acctgctcctgtaatgcaccaaaagtaacaatgatttcggatactattaacacatatcatttcataaatggtaagttttaca------ctctatgtaatg |
300 |
Q |
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| T |
13850077 |
acaagctcctgtaa-gcaccaaaagtaacaatgatttcatatactattaacacacatcatttcataaatgataagttttacaaacattttctatgtattg |
13850175 |
T |
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| Q |
301 |
tttaccttgagtttttcat |
319 |
Q |
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| T |
13850176 |
tttaccttgagtttttcat |
13850194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 13850194 - 13850308
Alignment:
| Q |
123 |
ttttcttccgtaagcttattaatcacttcattttcagtaaaattagcaggaagctccagtttagttttcttttccaatgaattaacctgctcctgtaatg |
222 |
Q |
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| T |
13850194 |
ttttcttcggcaagtttattaatcagttcgttgtctgtaacattatcaggaagctccagtttagttttcttttccaatgaattaacaagctcctgcaaat |
13850293 |
T |
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| Q |
223 |
caccaaaagtaacaa |
237 |
Q |
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| T |
13850294 |
caccaaaagtaacaa |
13850308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 13841425 - 13841505
Alignment:
| Q |
8 |
aatgaattaaccagatcctgaaaagtatcagaagtaataataattatggatattacaataaaactagaaaaataaatttca |
88 |
Q |
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| T |
13841425 |
aatgaattaactagatcctgcaaagtatcagaagtagtaacaattatgggtattacaatagaactagaaaaataaatttca |
13841505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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