View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_35 (Length: 303)
Name: NF21043_low_35
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 7732986 - 7732789
Alignment:
| Q |
29 |
tttgaaatcaatatacaagttgtagggccaagatgttacnnnnnnnnnctgcactattgtcacttccaataaaaaggtgtttgttactctagttggtgta |
128 |
Q |
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| T |
7732986 |
tttgaaatcaatatacaagttgtagggccaagatgttacaaaaaaaa-ctgcactattgtcacttccaataaaaaggtgtttgttactctagttggtgta |
7732888 |
T |
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| Q |
129 |
ccactacacatacttgcattgctatcttttgtcaaattgatatattgaaggtttgtgaacacaaaaaactatagtaatatttattggtttcttgcaatg |
227 |
Q |
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| T |
7732887 |
ccactacacatacttgcattgctctcttttgtcaaattgatatattgaaggtttgtgaacacaaaaaactatagtaatatttattggtttcttgcaatg |
7732789 |
T |
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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 30729527 - 30729593
Alignment:
| Q |
96 |
aataaaaaggtgtttgttactctagttggtgtaccactacacatacttgcattgctatcttttgtca |
162 |
Q |
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| T |
30729527 |
aatataaaggagtttgttgctctagttggtgtgccactacacatacttgcattgctatcttttgtca |
30729593 |
T |
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