View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_37 (Length: 295)
Name: NF21043_low_37
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 4756935 - 4756688
Alignment:
| Q |
11 |
atgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacag |
110 |
Q |
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| T |
4756935 |
atgaagatggtagtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacag |
4756836 |
T |
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| Q |
111 |
cactatcctcaatgagaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagat |
210 |
Q |
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| T |
4756835 |
cactatcctcaatgagactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagat |
4756736 |
T |
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| Q |
211 |
tccatggaatgatcttttacctgtaaggaccatggttgaatgagggta |
258 |
Q |
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| T |
4756735 |
tccatggaatgatcttttacctgtaaggaccatggttgaatgagggta |
4756688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 4749086 - 4748878
Alignment:
| Q |
22 |
agtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctca |
121 |
Q |
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| T |
4749086 |
agtgatgacatcaaaagtgaactttttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttct |
4748987 |
T |
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| Q |
122 |
atgagaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatg |
221 |
Q |
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| T |
4748986 |
atgagaccaatataattgtacaa---ttcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatg |
4748890 |
T |
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| Q |
222 |
atcttttacctg |
233 |
Q |
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| T |
4748889 |
attttttccctg |
4748878 |
T |
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