View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_39 (Length: 270)
Name: NF21043_low_39
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 36883398 - 36883161
Alignment:
| Q |
18 |
cagagaagcaaagaccgataagtgaagaaatggcaaaggcgtcgaatgcaggcttgccttctaatactggactaccttcatcggttgtgccaccaggtac |
117 |
Q |
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| T |
36883398 |
cagagaagcaaagaccgataagtgaagaaatggcaaaggcgtcaaatgcaggcttgccttctaatactggactgccttcatcggttgtgccgccaggtac |
36883299 |
T |
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| Q |
118 |
ttggcttgctgtggcgaaggaaacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactgctgctctcttgtataaga |
217 |
Q |
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| T |
36883298 |
ttggcttgctgtggcaaaggaaacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactgctgctctcttgtataaga |
36883199 |
T |
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| Q |
218 |
ttttcgtgtgttgtcttgaaaatttcacttgatgtttt |
255 |
Q |
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| T |
36883198 |
ttttcgtgtgttgtcttgaaaatttcacttgatgtttt |
36883161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 36893399 - 36893164
Alignment:
| Q |
20 |
gagaagcaaagaccgataagtgaagaaatggcaaaggcgtcgaatgcaggcttgccttctaatactggactaccttcatcggttgtgccaccaggtactt |
119 |
Q |
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| T |
36893399 |
gagaagcagagaccgataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacag |
36893300 |
T |
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| Q |
120 |
ggcttgctgtggcgaaggaaacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactgctgctctcttgtataagatt |
219 |
Q |
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| T |
36893299 |
cgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacc |
36893200 |
T |
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| Q |
220 |
ttcgtgtgttgtcttgaaaatttcacttgatgtttt |
255 |
Q |
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| T |
36893199 |
tttgtgtgttttcttgaaaatttctcttgatgtttt |
36893164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 36903160 - 36903029
Alignment:
| Q |
61 |
gaatgcaggcttgccttctaatactggactaccttcatcggttgtgccaccaggtacttggcttgctgtggcgaaggaaacaccggctacaaggccagat |
160 |
Q |
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| T |
36903160 |
gaatgcaggattgccttctaatactggtctaccctca---gttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaagcgcggct |
36903064 |
T |
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| Q |
161 |
acgacggagcaggattctgacgtgtcttttagcca |
195 |
Q |
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| T |
36903063 |
acaaccgagcaggaatctgctgtgttttttagcca |
36903029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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