View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_40 (Length: 269)
Name: NF21043_low_40
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_40 |
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| [»] scaffold0088 (1 HSPs) |
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Alignment Details
Target: scaffold0088 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 48482 - 48235
Alignment:
| Q |
21 |
agggtaagatatctcttaaagtttaacaaaacattatagattcgaatttaaggtccgataaaatcatattctagtttgatcttacaaacaattaatttaa |
120 |
Q |
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| T |
48482 |
agggtaagatatctcttaaagtttaacaaaacat-atagattcgaatttaaggtccgataaaatcatattctagtttgatcttacaaacaataaatttaa |
48384 |
T |
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| Q |
121 |
aactagcatttttgtttatcaaaaacaccaggaaaccggaacataattgttaaaaatataatgtctcaaatattaacaatgtatatacctgatccattac |
220 |
Q |
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| T |
48383 |
aactagcatttttgtttatcaaaaacaccaggaaacaggaacataattgttaaaaatataatgtctcaaatattaacaatgtatacacctgatccatcac |
48284 |
T |
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| Q |
221 |
aatcaagacagagtctctaattaacttcgttaatctgtcatctttgact |
269 |
Q |
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| T |
48283 |
aatcttgacagaatctctaattaacttcgttaatctgtcatctttgact |
48235 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 20623120 - 20623067
Alignment:
| Q |
92 |
tagtttgatcttacaaacaattaatttaaaactagcatttttgtttatcaaaaaca |
147 |
Q |
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| T |
20623120 |
tagtttgatcctacaaacaattaatttaaaacta--atgtttgtttaccaaaaaca |
20623067 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 49300489 - 49300546
Alignment:
| Q |
89 |
ttctagtttgatcttacaaacaattaatttaaaactagcatttttgtttatcaaaaaca |
147 |
Q |
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| T |
49300489 |
ttctagtttgatcctacaaataagtaatttaaaactagca-tcttgtttttcaaaaaca |
49300546 |
T |
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