View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21043_low_42 (Length: 259)

Name: NF21043_low_42
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21043_low_42
NF21043_low_42
[»] chr4 (4 HSPs)
chr4 (14-239)||(46865563-46865788)
chr4 (57-242)||(46901433-46901622)
chr4 (152-237)||(46874370-46874455)
chr4 (147-203)||(46892226-46892282)
[»] chr8 (1 HSPs)
chr8 (23-239)||(22689866-22690088)
[»] chr3 (5 HSPs)
chr3 (57-237)||(19847177-19847360)
chr3 (84-203)||(27310811-27310930)
chr3 (133-203)||(27300956-27301026)
chr3 (211-239)||(27310665-27310693)
chr3 (14-42)||(27310977-27311005)
[»] chr5 (2 HSPs)
chr5 (62-170)||(27441080-27441188)
chr5 (196-240)||(27441022-27441066)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 46865788 - 46865563
Alignment:
Q  14 catcaccaatgaccatgtttccaaaattctgtctgtggagtagaatccttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctcca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865788 catcaccaatgaccatgtttccaaaattctgtctgtggagtagaatccttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctcca 46865689  T
Q  114 ctgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatctt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46865688 ctgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatctt 46865589  T
Q  214 cttagcctgctcctcttcctttgcca 239  Q
    ||||||||||||||||||||||||||    
T  46865588 cttagcctgctcctcttcctttgcca 46865563  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 242
Target Start/End: Complemental strand, 46901622 - 46901433
Alignment:
Q  57 aatccttatccagatgaaggg-tgtttccaagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaa 155  Q
    ||||||||| ||||||| ||| ||||||||||||||||||  |||  |||| |||||| |||||| |||| |||||||| ||||||  || |||||||||    
T  46901622 aatccttatacagatgagggggtgtttccaagagcacaaagttcacttcaggtctccattgcactaggcaagttgggaaaaacaagtggtcaatcatcaa 46901523  T
Q  156 tccaatcaccataaacacgattgatcttgtt---taatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgccatga 242  Q
    ||||||||||||||| || ||||||||| ||   ||||||||||| |||||| ||| |||||||| |||||||||| ||||||| |||||    
T  46901522 tccaatcaccataaataccattgatcttcttgcctaatttcaacctaagtaagtgcttcttcttatcctgctcctcatcctttgtcatga 46901433  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 46874455 - 46874370
Alignment:
Q  152 tcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgc 237  Q
    |||||||||||||| |||| ||||||||||| | | |||||||||| ||||| | |  ||||||| ||||||||||||||||||||    
T  46874455 tcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagtatacgtttcttctttgcctgctcctcttcctttgc 46874370  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 46892282 - 46892226
Alignment:
Q  147 aatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagta 203  Q
    ||||||||||||||||||| |||| ||||||||||| | | |||||||||| |||||    
T  46892282 aatcatcaatccaatcaccgtaaatacgattgatctggctgaatttcaacccaagta 46892226  T

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Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 22689866 - 22690088
Alignment:
Q  23 tgaccatgtttccaaaattct--gtctgtggagtagaatccttatccagatgaaggg-tgtttccaagagcacaaaactcaactcagttctccactgcac 119  Q
    |||| ||||||||||||||||  ||| | |||| |||||| |||||||||||| ||| ||||||||||||||||||| ||||||||| ||||| ||||||    
T  22689866 tgacgatgtttccaaaattctttgtcagcggagaagaatcattatccagatgagggggtgtttccaagagcacaaaattcaactcaggtctcctctgcac 22689965  T
Q  120 ttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattg---atcttgtttaatttcaaccaaagtaaatgcatcttctt 216  Q
    |||||  |||||| |||| |||| |||||||||||||||||||| |||| | |  ||||    |||||||||||||||||||||||||| || |||||||    
T  22689966 ttggctagttgggtagaataagaggtgaatcatcaatccaatcagcatatatagtattggtcttcttgtttaatttcaaccaaagtaaacgcttcttctt 22690065  T
Q  217 agcctgctcctcttcctttgcca 239  Q
    |||||||||||||||||||||||    
T  22690066 agcctgctcctcttcctttgcca 22690088  T

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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 19847360 - 19847177
Alignment:
Q  57 aatccttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaat 156  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||| || ||||| |||||||||||| |||||||| |||||||  ||||||||||||    
T  19847360 aatccttatccagatgaagtgagtttccaagagcacaaaattcaacttagatctcctctgcacttggcaagttgggaaaaacaagagatgaatcatcaat 19847261  T
Q  157 ccaatcaccataaacacgattgatct---tgtttaatttcaaccaaagtaaatgcatcttcttagcctgctcctcttcctttgc 237  Q
    ||||||| |||| | |  ||||||||   ||||||||||| ||||||||||| || |||||||||| |||||| ||||||||||    
T  19847260 ccaatcagcatatatagtattgatcttcgtgtttaatttccaccaaagtaaaggcttcttcttagcttgctccacttcctttgc 19847177  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 27310930 - 27310811
Alignment:
Q  84 caagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatctt 183  Q
    ||||||||||||| |||||| || |||||| ||||||| |||  || ||||||||||||  | |||||||||| ||||||||||||| ||||||||||||    
T  27310930 caagagcacaaaattcaactgaggtctccattgcacttagcaactttggaagaacaagagttcaatcatcaattcaatcaccataaatacgattgatctt 27310831  T
Q  184 gtttaatttcaaccaaagta 203  Q
    | | ||||| |||| |||||    
T  27310830 gctgaattttaacccaagta 27310811  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 27301026 - 27300956
Alignment:
Q  133 aagaacaagaagtgaatcatcaatccaatcaccataaacacgattgatcttgtttaatttcaaccaaagta 203  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||| | | |||||||||| |||||    
T  27301026 aagaacaagaagtcgatcatcaatccaatcaccataaatacgattgatctcgctgaatttcaacccaagta 27300956  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 27310693 - 27310665
Alignment:
Q  211 cttcttagcctgctcctcttcctttgcca 239  Q
    |||||||||||||||||||||||||||||    
T  27310693 cttcttagcctgctcctcttcctttgcca 27310665  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 27311005 - 27310977
Alignment:
Q  14 catcaccaatgaccatgtttccaaaattc 42  Q
    |||||||||||||||||||||||||||||    
T  27311005 catcaccaatgaccatgtttccaaaattc 27310977  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 27441188 - 27441080
Alignment:
Q  62 ttatccagatgaagggtgtttccaagagcacaaaactcaactcagttctccactgcacttggcaggttgggaagaacaagaagtgaatcatcaatccaat 161  Q
    |||||||||||||||| |||||||||||||||||| ||||||||  ||| | || ||||||||| ||||||||||||||||  | ||||||| |||||||    
T  27441188 ttatccagatgaagggagtttccaagagcacaaaattcaactcatgtcttctcttcacttggcaagttgggaagaacaagagtttaatcatcgatccaat 27441089  T
Q  162 caccataaa 170  Q
    |||||||||    
T  27441088 caccataaa 27441080  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 27441066 - 27441022
Alignment:
Q  196 ccaaagtaaatgcatcttcttagcctgctcctcttcctttgccat 240  Q
    |||||||||| || |||||||||| ||||||| ||||||||||||    
T  27441066 ccaaagtaaaggcttcttcttagcttgctccttttcctttgccat 27441022  T

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