View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_44 (Length: 258)
Name: NF21043_low_44
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 24203446 - 24203215
Alignment:
| Q |
1 |
cctataaactcttgaagaatacttcaaggacaaagtcattaaattcaaagcggtgtaagtcaagaaaagatattccagtttagtaggtaacacctagaat |
100 |
Q |
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| T |
24203446 |
cctataaactcttgcagaatacttcaaggacaa-gtcattaaattcaaactggtttaagtcaacaaaagatattccagt-------ggaatacttagaat |
24203355 |
T |
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| Q |
101 |
ttaggttgggtctaactcaaaccttacaaactggcttgcaaggtgatgactgcatactcaaataacttcttcaagttgataatatccctcacatggatct |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24203354 |
ttaggttgggtctaactcagcccttacaaactggcttgcaaggtgatgactgcgtactcaaataacttcttcgagttgataatatccctcacatggatct |
24203255 |
T |
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| Q |
201 |
catgagatcttacaggatggagaaaatgtggcccggcaaa |
240 |
Q |
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|||||||||||||||||||||||||||| |||||| |||| |
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| T |
24203254 |
catgagatcttacaggatggagaaaatgaggcccgacaaa |
24203215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 29409890 - 29409987
Alignment:
| Q |
33 |
aagtcattaaattcaaagcggtgtaagtcaagaaaagatattccagtttagtaggtaacacctagaatttaggttgggtctaactcaaaccttacaaa |
130 |
Q |
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| T |
29409890 |
aagtcattaaattcaaagaggtgtatgtcaataaaagatattccagtttagcaattaactcttagaatttagggtgggcctaactcaacccttacaaa |
29409987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 27560428 - 27560486
Alignment:
| Q |
33 |
aagtcattaaattcaaagcggtgtaagtcaagaaaagatattccagtttagtaggtaac |
91 |
Q |
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| T |
27560428 |
aagtcattcaattcaaagaggtgtaaatcaacaaaaggtattcaagtttagtaggtaac |
27560486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 36667952 - 36668010
Alignment:
| Q |
33 |
aagtcattaaattcaaagcggtgtaagtcaagaaaagatattccagtttagtaggtaac |
91 |
Q |
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|||||||||||||||||| ||||||| || | ||| ||||||||||||||||||||| |
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| T |
36667952 |
aagtcattaaattcaaagaggtgtaaatcgacaaacagtattccagtttagtaggtaac |
36668010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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