View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_5 (Length: 687)
Name: NF21043_low_5
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 10 - 664
Target Start/End: Original strand, 34547750 - 34548404
Alignment:
| Q |
10 |
acatcatcattatgattatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatact |
109 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |
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| T |
34547750 |
acatcatcattatgatcatccattaacttccaagtaccatcagattgttgaaccatacccttattctcaactaccctccaattctcaggaatgtgatatt |
34547849 |
T |
|
| Q |
110 |
catcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatg |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34547850 |
catcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatg |
34547949 |
T |
|
| Q |
210 |
caagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttcagtgtcgatttctaattcctctccaactttgtaatagaaaaac |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34547950 |
caagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttcggtgtcgatttctaattcctctccaactttgtaatagaaaaac |
34548049 |
T |
|
| Q |
310 |
gtgagactttttggaacaatatcattttcatttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatcttttgaaagtaagaatttccaacac |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34548050 |
gtgagactttttggaacaatatcattttcatttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatcttttgaaagtaagaatttccaacac |
34548149 |
T |
|
| Q |
410 |
gaggtgcaccaaatgcaaatgttgtaactggacatgctttttgaggttgcccttttggcatgttgaatttattagcaactatatccactgaacttatagt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34548150 |
gaggtgcaccaaatgcaaatgttgtaactggacatgctttttgaggttgctcttttggcatgttgaatttattagcaactatatccactgaacttatagt |
34548249 |
T |
|
| Q |
510 |
tgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtatagctccacaagtctgctgatctcgttcaggacctttata |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34548250 |
tgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtatagctccacaagtctgctgatctcgttcaggaccttaata |
34548349 |
T |
|
| Q |
610 |
tttgtcacattacaaatattagaaatccaaacttcccatcatattcatatcatat |
664 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34548350 |
tttgtcacattacaaatattagaaatccaaacttcccatcatattcatatcatat |
34548404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 10 - 630
Target Start/End: Original strand, 34556243 - 34556863
Alignment:
| Q |
10 |
acatcatcattatgattatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatact |
109 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34556243 |
acatcatcattatgatcatccattagcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatact |
34556342 |
T |
|
| Q |
110 |
catcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34556343 |
catcttttaaaccatcattacttttgtttaatagtgcaatgtcacgattcacctccaaattgaaccctcctttgcttccttgtgttcctgcaattccatg |
34556442 |
T |
|
| Q |
210 |
caagtaaacctccatgttatgtgcactaaccccactcttcaagtacttagattcttcagtgtcgatttctaattcctctccaactttgtaata-gaaaaa |
308 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| || || |||| | || |
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| T |
34556443 |
caagtaaacctccatgttatgttcactaacaccactcttcaagtactttgatttttcagtgtcgatttctaattcctctcccacctttgaatatgcaagg |
34556542 |
T |
|
| Q |
309 |
cgtgagactttttggaacaatatcattttcatttcgaacaaacaatgcactcaaatctttgtggtcagagaaaatcttttgaaagtaagaatttccaaca |
408 |
Q |
| |
|
||| ||||| |||||||||| || || | ||||||| ||||||||| |||||||| |||| ||| ||||||||||||| ||||| ||||||||||||| |
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|
| T |
34556543 |
cgt-agactacttggaacaatgtcgttgttgtttcgaataaacaatgctctcaaatcattgttgtcggagaaaatcttttcaaagttagaatttccaaca |
34556641 |
T |
|
| Q |
409 |
cgaggtgcaccaaatgcaaatgttgtaactggacatgctttttgaggttgcccttttggcatgttgaatttattagcaactatatccactgaacttatag |
508 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |
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|
| T |
34556642 |
cgaggtgaaccaaatgcaaataatgtgactggacatgttttttgaggttgcccttttggtatgttgaatttattagcaactatatccatagagcttatag |
34556741 |
T |
|
| Q |
509 |
ttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtatagctccacaagtctgctgatctcgttcaggacctttat |
608 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||| |
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| T |
34556742 |
ttgcaagtgcaccacccaagctgtgtcccgttacagttatgctaatttcttcattcttatatagctccacaagtctgctaatctcgtttaagacctttat |
34556841 |
T |
|
| Q |
609 |
atttgtcacattacaaatatta |
630 |
Q |
| |
|
| ||| |||||||||||||||| |
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|
| T |
34556842 |
aattgccacattacaaatatta |
34556863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 4674379 - 4674568
Alignment:
| Q |
34 |
agcttccaagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatcattacttt |
133 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||||||||||| || |||||||| | | || | | | || ||||||||||||||||| ||| |
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|
| T |
4674379 |
agcttccatgaaccatctaattgttgaaccatacccttattctctacaaccctccatgacactggcacaaggtattcatcttttaaaccatccaatgttt |
4674478 |
T |
|
| Q |
134 |
tgtttaatagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctcca |
223 |
Q |
| |
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| || | |||||||| |||||||| ||||| | |||||| ||| |||||| |||||||||||||| | ||||||||| ||| |||||| |
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| T |
4674479 |
tattcacaagtgcaatatcacgattaacctcaagtttgaacactcttttactcccttgtgttcctgccactccatgcaaataagcctcca |
4674568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 493 - 570
Target Start/End: Original strand, 4674847 - 4674924
Alignment:
| Q |
493 |
tccactgaacttatagttgcaagtgcaccacccaaactgtgtccagttacagttatgctaatttcttcattcttgtat |
570 |
Q |
| |
|
||||||| | ||| |||||||| |||| |||| |||||||| || |||| ||||||||| |||||||||||||||||| |
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|
| T |
4674847 |
tccactgcatttagagttgcaattgcagcacctaaactgtgacctgttatagttatgcttatttcttcattcttgtat |
4674924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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