View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_53 (Length: 241)
Name: NF21043_low_53
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_53 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30781587 - 30781817
Alignment:
| Q |
1 |
ctctacatctcatgcttcactaccttcgatgagataggttttggtccaatttattcctagcagtaaacctgaagacctattattaaaatgcaaattttaa |
100 |
Q |
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| T |
30781587 |
ctctacatctcatgcttcactaccttcgatgagataggttttggtccaacttattcctagcagtaaacctgaagacctattattaaaatgcaaattttaa |
30781686 |
T |
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| Q |
101 |
cgatgcatagtttgtgaattggatttttcattatagtaagcatggaataatcataagcaataatcataaattaggcgattagtgactnnnnnnntaacaa |
200 |
Q |
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| T |
30781687 |
cgatgcatagtttgtgaattggatttttcattatagt--------aataagcat--ggaataatcataaattaggcgattagtgactaaaaaaataacaa |
30781776 |
T |
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| Q |
201 |
atcaccagaagggatgaatatgttaagaatcaaagaataat |
241 |
Q |
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| T |
30781777 |
atcaccagaagggatgaatatgttaagaatcaaagaataat |
30781817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 30781879 - 30782019
Alignment:
| Q |
91 |
caaattttaacgatgcatagtttgtgaattggatttttcattatagtaagcatggaataatcataagcaataatcataaattaggcgattagtgactnnn |
190 |
Q |
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| T |
30781879 |
caaattttaacgatgcatagtttgtgaattggatttttcattatagtaa--------taagcat--ggaataatcataaattaggcgattagtgactaaa |
30781968 |
T |
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| Q |
191 |
nnnntaacaaatcaccagaagggatgaatatgttaagaatcaaagaataat |
241 |
Q |
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| T |
30781969 |
aaaataacaaatcaccagaagggatgaatatgttaagaatcaaagaataat |
30782019 |
T |
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