View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_54 (Length: 238)
Name: NF21043_low_54
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_54 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 2186666 - 2186862
Alignment:
| Q |
22 |
aatagggaacaagaaaaattgaaatattatacctgaatttctcattgtctaaagaagaagaggtagaatggaaaggagatgaattgaagaagatggaaaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2186666 |
aatagggaacaagaaaaattgaaatattatacctgaatttctcattgtctaaagaagaagaggtagaatggaaaggagatgaattgaagaagatggaaaa |
2186765 |
T |
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| Q |
122 |
tcttagaacaattatcatccgaaattgccccttttccaaaggttgtcaacatcttccaaatggtttgagagtgctggattggcctaaatacccttca |
218 |
Q |
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| T |
2186766 |
tcttagaacaattatcatccgaaattgccccttttccaaaggttgtcaacatcttccaaatggtttgagagtgctggattggcctaaatacccttca |
2186862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 2172618 - 2172538
Alignment:
| Q |
138 |
atccgaaattgccccttttccaaaggttgtcaacatcttccaaatggtttgagagtgctggattggcctaaatacccttca |
218 |
Q |
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| T |
2172618 |
atccgaaattgccggttttccaatgattgtcaacatcttccaaatggtttaagagtgctggattggcctagatatccttca |
2172538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 28141450 - 28141498
Alignment:
| Q |
73 |
aagaagaagaggtagaatggaaaggagatgaattgaagaagatggaaaa |
121 |
Q |
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| T |
28141450 |
aagaagaagtggtagaatggaaaggagatgaattaaagaagatggaaaa |
28141498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 29827838 - 29827881
Alignment:
| Q |
78 |
gaagaggtagaatggaaaggagatgaattgaagaagatggaaaa |
121 |
Q |
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| T |
29827838 |
gaagaggtagaatggaaaggagatgaattgaagaagatgaaaaa |
29827881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 26341781 - 26341744
Alignment:
| Q |
84 |
gtagaatggaaaggagatgaattgaagaagatggaaaa |
121 |
Q |
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| T |
26341781 |
gtagaatggaaaggagatgaattcaagaagatgaaaaa |
26341744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 28096726 - 28096673
Alignment:
| Q |
84 |
gtagaatggaaaggagatgaattgaagaagatggaaaatcttagaacaattatc |
137 |
Q |
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| T |
28096726 |
gtagagtggaaaggagatgaattaaagaagatgaaaaaccttaaaacacttatc |
28096673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 28151099 - 28151136
Alignment:
| Q |
84 |
gtagaatggaaaggagatgaattgaagaagatggaaaa |
121 |
Q |
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| T |
28151099 |
gtagaatggaaaggagatgaattcaagaagatgaaaaa |
28151136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 21425 - 21505
Alignment:
| Q |
138 |
atccgaaattgccccttttccaaaggttgtcaacatcttccaaatggtttgagagtgctggattggcctaaatacccttca |
218 |
Q |
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| T |
21425 |
atccgaaattgccggttttccaatgattgtcaacatcttccaaatggtttaagagtgctggattggcctagatatccttca |
21505 |
T |
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