View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21043_low_57 (Length: 235)

Name: NF21043_low_57
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21043_low_57
NF21043_low_57
[»] chr6 (8 HSPs)
chr6 (1-223)||(15034777-15034999)
chr6 (124-214)||(18611239-18611325)
chr6 (124-211)||(29157279-29157362)
chr6 (167-214)||(24737659-24737706)
chr6 (166-214)||(33346338-33346386)
chr6 (166-214)||(34399691-34399739)
chr6 (61-108)||(24919249-24919297)
chr6 (186-214)||(35119285-35119313)
[»] chr7 (9 HSPs)
chr7 (120-214)||(5757437-5757527)
chr7 (120-215)||(32090627-32090718)
chr7 (144-214)||(30428923-30428988)
chr7 (144-214)||(46573450-46573515)
chr7 (168-214)||(48690945-48690991)
chr7 (168-214)||(48691042-48691088)
chr7 (166-214)||(33797981-33798029)
chr7 (166-214)||(46024077-46024125)
chr7 (168-214)||(28396772-28396818)
[»] chr5 (9 HSPs)
chr5 (120-214)||(18465481-18465571)
chr5 (124-214)||(16668723-16668809)
chr5 (144-214)||(23335657-23335722)
chr5 (144-214)||(13362820-13362885)
chr5 (144-211)||(2827017-2827079)
chr5 (144-214)||(28070103-28070168)
chr5 (168-214)||(34329177-34329223)
chr5 (124-164)||(8948983-8949024)
chr5 (178-214)||(25017196-25017232)
[»] chr4 (11 HSPs)
chr4 (120-214)||(50563654-50563744)
chr4 (144-214)||(637904-637969)
chr4 (124-196)||(48077793-48077861)
chr4 (166-214)||(38485641-38485689)
chr4 (144-223)||(51837041-51837115)
chr4 (144-214)||(4168408-4168473)
chr4 (144-214)||(22181195-22181260)
chr4 (168-214)||(26447381-26447427)
chr4 (144-210)||(27764294-27764355)
chr4 (167-214)||(36621669-36621716)
chr4 (169-214)||(45256025-45256070)
[»] chr1 (10 HSPs)
chr1 (120-214)||(37639392-37639482)
chr1 (144-214)||(18056834-18056899)
chr1 (144-214)||(30802446-30802511)
chr1 (144-211)||(45889649-45889711)
chr1 (144-214)||(22348089-22348154)
chr1 (144-214)||(23320035-23320100)
chr1 (124-214)||(16115901-16115987)
chr1 (124-214)||(35198110-35198196)
chr1 (144-214)||(179658-179723)
chr1 (166-214)||(8402278-8402326)
[»] chr2 (7 HSPs)
chr2 (124-214)||(4281717-4281803)
chr2 (168-214)||(14551288-14551334)
chr2 (144-214)||(18298061-18298126)
chr2 (135-223)||(25995328-25995411)
chr2 (144-214)||(20709824-20709889)
chr2 (166-214)||(25192942-25192990)
chr2 (168-211)||(4579787-4579830)
[»] chr3 (14 HSPs)
chr3 (167-223)||(8718142-8718198)
chr3 (167-223)||(9070029-9070085)
chr3 (120-214)||(23699378-23699468)
chr3 (120-214)||(23717833-23717923)
chr3 (120-214)||(23736289-23736379)
chr3 (144-214)||(50754056-50754121)
chr3 (144-214)||(52987600-52987665)
chr3 (166-223)||(39099238-39099295)
chr3 (166-214)||(7045267-7045315)
chr3 (144-214)||(51362388-51362453)
chr3 (144-214)||(16277364-16277429)
chr3 (178-214)||(17627210-17627246)
chr3 (166-214)||(19385282-19385330)
chr3 (120-194)||(23755349-23755419)
[»] chr8 (10 HSPs)
chr8 (144-214)||(7614118-7614183)
chr8 (144-214)||(32987395-32987460)
chr8 (144-214)||(39022025-39022090)
chr8 (166-214)||(8550554-8550602)
chr8 (143-214)||(15181841-15181907)
chr8 (144-214)||(4836651-4836716)
chr8 (144-214)||(4842096-4842161)
chr8 (144-214)||(7058164-7058229)
chr8 (168-211)||(1208762-1208805)
chr8 (144-214)||(15260801-15260866)
[»] scaffold0097 (1 HSPs)
scaffold0097 (144-214)||(13663-13728)
[»] scaffold0544 (1 HSPs)
scaffold0544 (166-214)||(10642-10690)
[»] scaffold0337 (1 HSPs)
scaffold0337 (166-214)||(7067-7115)
[»] scaffold0238 (1 HSPs)
scaffold0238 (144-214)||(25182-25247)
[»] scaffold0194 (1 HSPs)
scaffold0194 (144-214)||(27657-27722)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15034777 - 15034999
Alignment:
Q  1 cccagttgggccggcgaccaccgcgccggcgttttaatgttgaacggagaagatgacctttgttgcagagcttctctctctaaaataatttagagagaga 100  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  15034777 cccagtagggccggcgaccaccgcgccggcgttttaatgttgaccggagaagatgacctttgttgcagagcctctctctctaacataatttagagagaga 15034876  T
Q  101 agcattttaacttatgtttcacttatacctctttctttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15034877 agcattttaacttatgtttcacttatacctctttctttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagat 15034976  T
Q  201 ctgatggttgtgaatgatttatg 223  Q
    |||||||||||||||||||||||    
T  15034977 ctgatggttgtgaatgatttatg 15034999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 18611325 - 18611239
Alignment:
Q  124 tatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||| |||||||||||||||||||| ||||||||     |||||||||||||||||| ||||||||||||||||||||||||||    
T  18611325 tatacctctttcctttattccttgatttggtgtggtttgaga-----agcctatgattattacacgtgtacactagatctgatggttgtgaa 18611239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 29157362 - 29157279
Alignment:
Q  124 tatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgt 211  Q
    |||||||||||| |||||||||||||||||||||||||||||     ||||||  |||||||||| |||||||||||||||||||||||    
T  29157362 tatacctctttcctttattccttgatttggtgtagtttgaga-----agcctagtattattacacgtgtacactagatctgatggttgt 29157279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 24737659 - 24737706
Alignment:
Q  167 agaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  24737659 agaagcctaggattattacacgtgtacactagatctgatggttgtgaa 24737706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 33346338 - 33346386
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  33346338 gagaagcctataattattacacgtgtacactagatttgatggttgtgaa 33346386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 34399739 - 34399691
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  34399739 gagaagcctaggattattacacgtgtacactagatctgatgattgtgaa 34399691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 24919249 - 24919297
Alignment:
Q  61 tgttgcagagcttctctctctaaaata-atttagagagagaagcatttt 108  Q
    ||||||||||||||||||||||||| | | ||||||||||||| |||||    
T  24919249 tgttgcagagcttctctctctaaaacatacttagagagagaaggatttt 24919297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 35119313 - 35119285
Alignment:
Q  186 acatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||||||||||    
T  35119313 acatgtacactagatctgatggttgtgaa 35119285  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 5757527 - 5757437
Alignment:
Q  120 cacttatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||| |||||||||||||||||||||||||||||     || ||| ||||||||||| ||||||||||||||||||||||||||    
T  5757527 cacttatacctctttcctttattccttgatttggtgtagtttgaga-----agtctaggattattacacgtgtacactagatctgatggttgtgaa 5757437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 32090718 - 32090627
Alignment:
Q  120 cacttatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaat 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||     |||||||||||||||||| |||| ||||||| |||||||| |||||    
T  32090718 cacttatacctctttcctttattccttgatttggtgtagtttgaga-----agcctatgattattacacgtgtatactagatttgatggttctgaat 32090627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 30428988 - 30428923
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  30428988 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatctgatggttgtgaa 30428923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 46573450 - 46573515
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  46573450 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatctgatggttgtgaa 46573515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 48690991 - 48690945
Alignment:
Q  168 gaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||    
T  48690991 gaagcctatgattattacacgtgtacactagatttgatggttgtgaa 48690945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 48691088 - 48691042
Alignment:
Q  168 gaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  48691088 gaagcctaggattattacacgtgtacactagatctgatggttgtgaa 48691042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 33798029 - 33797981
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||| ||| ||||||||||| |||| |||||||||||||||||||||    
T  33798029 gagaagtctaggattattacacgtgtatactagatctgatggttgtgaa 33797981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 46024125 - 46024077
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||| ||| ||||||||||| ||||||||| ||||||||||||||||    
T  46024125 gagaagtctaggattattacacgtgtacactatatctgatggttgtgaa 46024077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 28396818 - 28396772
Alignment:
Q  168 gaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||| ||||||||| | |||||||||||||||||| |||||||    
T  28396818 gaagcctaggattattactcttgtacactagatctgatgattgtgaa 28396772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 18465481 - 18465571
Alignment:
Q  120 cacttatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||| |||||||||||||||||||||||||||||     || ||| ||||||||||| ||||||||||||||||||||||||||    
T  18465481 cacttatacctctttcctttattccttgatttggtgtagtttgaga-----agtctaagattattacacgtgtacactagatctgatggttgtgaa 18465571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 16668723 - 16668809
Alignment:
Q  124 tatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||| ||||||| |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  16668723 tatacctctttcctttattctttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatctgatggttgtgaa 16668809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 23335657 - 23335722
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||||||||||||||| ||||||||||||||||||||||||||    
T  23335657 ttgatttggtgtagtttgaga-----agcctatgattattacacgtgtacactagatctgatggttgtgaa 23335722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 13362885 - 13362820
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||||||||||||||| | ||||||||||||||||||||||||    
T  13362885 ttgatttggtgtagtttgaga-----agcctatgattattacacgtatacactagatctgatggttgtgaa 13362820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 2827017 - 2827079
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgt 211  Q
    |||||||||||||||||||||     |||||| ||| ||||||| |||||||||||||||||||||||    
T  2827017 ttgatttggtgtagtttgaga-----agcctaagataattacacgtgtacactagatctgatggttgt 2827079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 28070103 - 28070168
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     || ||| ||||||||||| ||||||||||||||||| ||||||||    
T  28070103 ttgatttggtgtagtttgaga-----agtctaggattattacacgtgtacactagatctgatagttgtgaa 28070168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 34329223 - 34329177
Alignment:
Q  168 gaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||  | ||||||||||||||||||||||||||    
T  34329223 gaagcctatgattattattcgtgtacactagatctgatggttgtgaa 34329177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 8949024 - 8948983
Alignment:
Q  124 tatacctctttc-tttattccttgatttggtgtagtttgaga 164  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  8949024 tatacctctttcctttattccttgatttggtgtagtttgaga 8948983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 25017196 - 25017232
Alignment:
Q  178 attattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||| ||||||||||||||||||||||||||    
T  25017196 attattacacgtgtacactagatctgatggttgtgaa 25017232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 50563654 - 50563744
Alignment:
Q  120 cacttatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||| |||||||||||||||||||||||||||||     | ||||| |||||||||| ||||||||||||||||||||||||||    
T  50563654 cacttatacctctttcctttattccttgatttggtgtagtttgaga-----aacctataattattacacgtgtacactagatctgatggttgtgaa 50563744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 637969 - 637904
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     ||||||  |||||||||||||||||||||||||||||||||||||    
T  637969 ttgatttggtgtagtttgaga-----agcctaaaattattacacatgtacactagatctgatggttgtgaa 637904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 48077793 - 48077861
Alignment:
Q  124 tatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacact 196  Q
    |||||||||||| |||||||||| ||||||||||||||||||     |||||| ||||||||||||||||||||    
T  48077793 tatacctctttcctttattccttaatttggtgtagtttgaga-----agcctaggattattacacatgtacact 48077861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 38485641 - 38485689
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  38485641 gagaagcctaggattattacacgtgtacattagatctgatggttgtgaa 38485689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 51837041 - 51837115
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatg 223  Q
    |||||||||||||||||||||     |||||| ||||||||||| |||||| || ||||||||||||||||  |||||||    
T  51837041 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacattaaatctgatggttgtgaagtatttatg 51837115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 4168473 - 4168408
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     | |||| ||||||||||  ||||||||||||||||||||||||||    
T  4168473 ttgatttggtgtagtttgaga-----aacctaggattattacatgtgtacactagatctgatggttgtgaa 4168408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 22181195 - 22181260
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     | |||| ||||||||||| ||||||||| ||||||||||||||||    
T  22181195 ttgatttggtgtagtttgaga-----aacctaggattattacacgtgtacactaaatctgatggttgtgaa 22181260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 26447381 - 26447427
Alignment:
Q  168 gaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||    
T  26447381 gaagcctagaattattacacgtgtacactagatctgatggttgtgaa 26447427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 27764355 - 27764294
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttg 210  Q
    |||||||||||||||||||||     ||| || ||||||||||| ||||||||||||||||||||||    
T  27764355 ttgatttggtgtagtttgaga-----agcgtaggattattacacgtgtacactagatctgatggttg 27764294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 36621669 - 36621716
Alignment:
Q  167 agaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||| || ||||||||||| |||||| |||||||||||||||||||    
T  36621669 agaagcataggattattacacgtgtacattagatctgatggttgtgaa 36621716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 45256070 - 45256025
Alignment:
Q  169 aagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||| ||||||||||| ||||||||| ||||||| ||||||||    
T  45256070 aagcctaggattattacacgtgtacactatatctgatagttgtgaa 45256025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 37639482 - 37639392
Alignment:
Q  120 cacttatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||| |||||||||||||||||||||||||||||     || |||| |||||||||| ||||||||||||||||||||||||||    
T  37639482 cacttatacctctttcctttattccttgatttggtgtagtttgaga-----agtctataattattacacgtgtacactagatctgatggttgtgaa 37639392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 18056899 - 18056834
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  18056899 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatctgatggttgtgaa 18056834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 30802511 - 30802446
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  30802511 ttgatttggtgtagtttgaga-----agcctaagattattacacgtgtacactagatctgatggttgtgaa 30802446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 45889711 - 45889649
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgt 211  Q
    |||||||||||||||||||||     |||||| |||||||||||||||| ||||||||||||||||||    
T  45889711 ttgatttggtgtagtttgaga-----agcctaagattattacacatgtatactagatctgatggttgt 45889649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 22348154 - 22348089
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| |||||||||||| |||||||||||||    
T  22348154 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatatgatggttgtgaa 22348089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 23320035 - 23320100
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     || ||| ||||||||||| ||||||||||||||||||||||||||    
T  23320035 ttgatttggtgtagtttgaga-----agtctaggattattacacgtgtacactagatctgatggttgtgaa 23320100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 16115987 - 16115901
Alignment:
Q  124 tatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||| |||||||||||||||||||||||||      ||||| ||  ||||||||||| |||||| ||||| |||||||||||||    
T  16115987 tatacctctttcctttattccttgatttggtgtagttt-----aagaagtcttggattattacacgtgtacattagatttgatggttgtgaa 16115901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 35198110 - 35198196
Alignment:
Q  124 tatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||| |||||| |||||||| ||||||||||| |     || ||| ||||||||||| ||||||||||||||||||| ||||||    
T  35198110 tatacctctttcctttatttcttgattttgtgtagtttgaaa-----agtctaggattattacacgtgtacactagatctgatggctgtgaa 35198196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 179723 - 179658
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     ||| |  ||||||||||| ||||||||||||||||||||||||||    
T  179723 ttgatttggtgtagtttgaga-----agcttgggattattacacgtgtacactagatctgatggttgtgaa 179658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 8402278 - 8402326
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||| |||| ||||||||||  ||||||||||||||||||||| ||||    
T  8402278 gagaaacctaggattattacatgtgtacactagatctgatggttatgaa 8402326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 4281717 - 4281803
Alignment:
Q  124 tatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||| |||||||||||||||| ||||||||||||     | |||| ||||||||||| ||||||||||||||||||||||||||    
T  4281717 tatacctctttcctttattccttgatttgctgtagtttgaga-----aacctaggattattacacgtgtacactagatctgatggttgtgaa 4281803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 14551288 - 14551334
Alignment:
Q  168 gaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14551288 gaagcctaggattattacacatgtacactagatctgatggttgtgaa 14551334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 18298061 - 18298126
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  18298061 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatctgatggttgtgaa 18298126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 25995411 - 25995328
Alignment:
Q  135 ctttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatg 223  Q
    |||||||||||||||||||||| ||||||      |||||| ||||||||||| ||||||||| ||||||||||||||||  |||||||    
T  25995411 ctttattccttgatttggtgtaatttgagt-----agcctaggattattacacgtgtacactaaatctgatggttgtgaagtatttatg 25995328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 20709889 - 20709824
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     ||| || ||||||||||  ||||||||||||||||||||||||||    
T  20709889 ttgatttggtgtagtttgaga-----agcgtaggattattacatgtgtacactagatctgatggttgtgaa 20709824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 25192990 - 25192942
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||||||  |||||||||| |||||||||||||| |||||||||||    
T  25192990 gagaagcctagaattattacacgtgtacactagatctaatggttgtgaa 25192942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 4579787 - 4579830
Alignment:
Q  168 gaagcctatgattattacacatgtacactagatctgatggttgt 211  Q
    ||||| || ||||||||||| |||||||||||||||||||||||    
T  4579787 gaagcataagattattacacgtgtacactagatctgatggttgt 4579830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 8718198 - 8718142
Alignment:
Q  167 agaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatg 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||    
T  8718198 agaagcctaggattattacacatgtacactagatctgatggttgtgaagtatttatg 8718142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 9070085 - 9070029
Alignment:
Q  167 agaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatg 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||    
T  9070085 agaagcctaggattattacacatgtacactagatctgatggttgtgaagtatttatg 9070029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 23699468 - 23699378
Alignment:
Q  120 cacttatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||| |||||||||||||||| ||||||||     || ||||||| ||||||||||| |||||| ||||| |||||||||||||    
T  23699468 cacttatacctctttcctttattccttgatttgatgtagttt-----gaaaagcctaggattattacacgtgtacattagatatgatggttgtgaa 23699378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 23717923 - 23717833
Alignment:
Q  120 cacttatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||| |||||||||||||||| ||||||||     || ||||||| ||||||||||| |||||| ||||| |||||||||||||    
T  23717923 cacttatacctctttcctttattccttgatttgatgtagttt-----gaaaagcctaggattattacacgtgtacattagatatgatggttgtgaa 23717833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 23736379 - 23736289
Alignment:
Q  120 cacttatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||| |||||||||||||||| ||||||||     || ||||||| ||||||||||| |||||| ||||| |||||||||||||    
T  23736379 cacttatacctctttcctttattccttgatttgatgtagttt-----gaaaagcctaggattattacacgtgtacattagatatgatggttgtgaa 23736289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 50754121 - 50754056
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  50754121 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatctgatggttgtgaa 50754056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 52987600 - 52987665
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  52987600 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatctgatggttgtgaa 52987665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 39099295 - 39099238
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatg 223  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||    
T  39099295 gagaagcctaggattattacacgtgtacactagatctgatggttgtgaaatatttatg 39099238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 7045267 - 7045315
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  7045267 gagaagcctacgattattacacgtgtacactagatctgatggttgtgaa 7045315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 51362388 - 51362453
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||| ||||||||||||||||    
T  51362388 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactaaatctgatggttgtgaa 51362453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 16277364 - 16277429
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     ||| || ||||||||||| |||||||||||| |||||||||||||    
T  16277364 ttgatttggtgtagtttgaga-----agcgtaggattattacacgtgtacactagatatgatggttgtgaa 16277429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 17627210 - 17627246
Alignment:
Q  178 attattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||| ||||||||||||||||||||||||||    
T  17627210 attattacacgtgtacactagatctgatggttgtgaa 17627246  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 19385282 - 19385330
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||||||  |||||||||| ||||||||| ||||||||||||||||    
T  19385282 gagaagcctagaattattacacgtgtacactaaatctgatggttgtgaa 19385330  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 23755419 - 23755349
Alignment:
Q  120 cacttatacctctttc-tttattccttgatttggtgtagtttgagaggagaagcctatgattattacacatgtaca 194  Q
    |||||||||||||||| |||||||||||||||| |||| |||     |||||||||| ||||||||||| ||||||    
T  23755419 cacttatacctctttcctttattccttgatttgatgtaattt-----gagaagcctaggattattacacgtgtaca 23755349  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 7614183 - 7614118
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||||||||||||||| |||||| |||||||||||||||||||    
T  7614183 ttgatttggtgtagtttgaga-----agcctatgattattacacgtgtacattagatctgatggttgtgaa 7614118  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 32987395 - 32987460
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||||||||||    
T  32987395 ttgatttggtgtagtttgaga-----agcctaggattattacacgtgtacactagatctgatggttgtgaa 32987460  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 39022090 - 39022025
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||| |||||||||||||||||||||||||||||| |||||||    
T  39022090 ttgatttggtgtagtttgaga-----agcctaggattattacacatgtacactagatctgatgattgtgaa 39022025  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 8550602 - 8550554
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  8550602 gagaagcttatgattattacacgtgtacactagatctgatggttgtgaa 8550554  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 15181907 - 15181841
Alignment:
Q  143 cttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||||||||||||||||||     | |||| ||||||||||| |||||||||||||||||| |||||||    
T  15181907 cttgatttggtgtagtttgaga-----aacctaagattattacacgtgtacactagatctgatgcttgtgaa 15181841  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 4836651 - 4836716
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||||||||||||||| |     ||| || ||||||||||| ||||||||||||||||||||||||||    
T  4836651 ttgatttggtgtagtttgaaa-----agcttaggattattacacgtgtacactagatctgatggttgtgaa 4836716  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 4842096 - 4842161
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||||||||||||||||| |     ||| || ||||||||||| ||||||||||||||||||||||||||    
T  4842096 ttgatttggtgtagtttgaaa-----agcttaggattattacacgtgtacactagatctgatggttgtgaa 4842161  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 7058229 - 7058164
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     || ||| ||||||||||| ||||||||||||| ||||||||||||    
T  7058229 ttgatttggtgtagtttgaga-----agtctaggattattacacgtgtacactagatcggatggttgtgaa 7058164  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 1208805 - 1208762
Alignment:
Q  168 gaagcctatgattattacacatgtacactagatctgatggttgt 211  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||    
T  1208805 gaagcctaggattattacacgtgtacactagatcttatggttgt 1208762  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 15260801 - 15260866
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     |||||  |||||||| || |||||||||||| |||||||||||||    
T  15260801 ttgatttggtgtagtttgaga-----agccttggattattaaacgtgtacactagatttgatggttgtgaa 15260866  T

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Target: scaffold0097 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 13728 - 13663
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     ||| || ||||||||||  ||||||||||||||||||||||||||    
T  13728 ttgatttggtgtagtttgaga-----agcgtaggattattacatgtgtacactagatctgatggttgtgaa 13663  T

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Target: scaffold0544 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 10642 - 10690
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||| |||| |||||||||| ||| |||||||||||||||||||||||    
T  10642 gagaaacctaggattattacatatgcacactagatctgatggttgtgaa 10690  T

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Target: scaffold0337 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 7115 - 7067
Alignment:
Q  166 gagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    ||||| |||| ||||||||||  ||||||||||||||||||||||||||    
T  7115 gagaaacctaggattattacatgtgtacactagatctgatggttgtgaa 7067  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 25182 - 25247
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     | |||| |||||| |||| ||||||||| ||||||||||||||||    
T  25182 ttgatttggtgtagtttgaga-----aacctaagattatgacacgtgtacactaaatctgatggttgtgaa 25247  T

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Target: scaffold0194 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 27722 - 27657
Alignment:
Q  144 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaa 214  Q
    |||||||||||||||||||||     ||||||  |||||||||| |||||||||||||| || ||||||||    
T  27722 ttgatttggtgtagtttgaga-----agcctagaattattacacgtgtacactagatcttatagttgtgaa 27657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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