View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_60 (Length: 233)
Name: NF21043_low_60
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 18664264 - 18664462
Alignment:
| Q |
17 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664264 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
18664363 |
T |
|
| Q |
117 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664364 |
tcttctgcaaacccattcttagcgagctgctttatcataatacatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatct |
18664462 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 15079564 - 15079366
Alignment:
| Q |
17 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15079564 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
15079465 |
T |
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| Q |
117 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
15079464 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgttcattcatgttcttgaatacgttgactgcatcatct |
15079366 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 7534813 - 7535011
Alignment:
| Q |
17 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
7534813 |
aatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatcaattgaa |
7534912 |
T |
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| Q |
117 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatct |
215 |
Q |
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||||||| |||||||||||| ||||| ||| |||||||| ||| ||||||||||||| ||||| |||| ||||||| |||| || |||||||||| |
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| T |
7534913 |
tcttctggaaacccattcttggcgagttgcattatcatagtatgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatct |
7535011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 7449275 - 7449473
Alignment:
| Q |
17 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
7449275 |
aatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatcaattgaa |
7449374 |
T |
|
| Q |
117 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatct |
215 |
Q |
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||||||||||| |||||||| |||| ||| |||||||| ||| ||||||||||||| ||||| |||| ||||||| |||| || |||||||||| |
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| T |
7449375 |
tcttctgcaaaaccattcttgacgagttgcattatcatagtatgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatct |
7449473 |
T |
|
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