View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_8 (Length: 643)
Name: NF21043_low_8
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 10 - 626
Target Start/End: Original strand, 11589028 - 11589631
Alignment:
| Q |
10 |
aagaatattggtgtcttaaaatattatttgccatattctggttcatcacaaggttcgaagaaagtagctagagatgaagaatagagattttttggagcaa |
109 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11589028 |
aagaatattggcgtcttaaaatattatttgccatattctggttcatcacaaggttcgaagaaagtagctagagatcaagaatagagattttttggagcaa |
11589127 |
T |
|
| Q |
110 |
tcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttggaaaatggaaattgataatctaattatcatagaaattcctgctaatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11589128 |
tcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttggaaaatggaaattgataatctaattatcatagaaattcctgctaatg |
11589227 |
T |
|
| Q |
210 |
ctgatgattttcaaattgtgagcatttcagaaggtgagaataataaagggaagaaaacttcacatcttaagagtaattatagaactataggaaaaactcg |
309 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
11589228 |
ctgatgattttcaaattgtgaacatttcagaaggtgag---aataaagggaagaaaacttcacatctt-------attatagaactataggaaaaacttg |
11589317 |
T |
|
| Q |
310 |
tcatcctaaacttttgagatgatgattatttattgaaacataacgggtttggccaatttcttgtcaagattggatcataaaagattaattcttactnnnn |
409 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11589318 |
tcatcctaaactttttagatgatgattatttattgaaacataaagggtttggccaatttattgtcaagattggatcataaaagattaattcttactaaaa |
11589417 |
T |
|
| Q |
410 |
nnncccgaatttgttttatttgctgaactatggatggattctaaagattctcccttaaactgactcaatataaaatgtcctaagctattttcctttaatg |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11589418 |
aaacccgaatttgttttatttgctgaactatggatggattctaaagattctcccttaaactgactcaatataatatgtcctaagctattttcctttaatg |
11589517 |
T |
|
| Q |
510 |
ctatacaaaacgtttcacaatatttatggagcacttgtnnnnnnntcctcttgtagatacttttctcttttttaataaagtttttgagtttaacggcata |
609 |
Q |
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| T |
11589518 |
ctatacaaaacgtttcacaatatttatggagcacttgtccccc---ccacttgtagatacttttctcttttttaataaagtttttgagtttaacggcata |
11589614 |
T |
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| Q |
610 |
tgatgggggttcattgg |
626 |
Q |
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| T |
11589615 |
tgatgggggttcattgg |
11589631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 10 - 625
Target Start/End: Original strand, 11601613 - 11602222
Alignment:
| Q |
10 |
aagaatattggtgtcttaaaatattatttgccatattctggttcatcacaaggttcgaagaaagtagctagagatgaagaatagagattttttggagcaa |
109 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11601613 |
aagaatattggcgtcttaaaatattatttgccatattctggttcatcacaaggttcgaagaaagtagctagagatcaagaatagagattttttggagcaa |
11601712 |
T |
|
| Q |
110 |
tcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttggaaaatggaaattgataatctaattatcatagaaattcctgctaatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11601713 |
tcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttggaaaatggaaattgataatctaattatcatagaaattcctgctaatg |
11601812 |
T |
|
| Q |
210 |
ctgatgattttcaaattgtgagcatttcagaaggtgagaataataaagggaagaaaacttcacatcttaagagtaattatagaactataggaaaaactcg |
309 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
11601813 |
ctgatgattttcaaattgtgaacatttcagaaggtgag---aataaagggaagaaaacttcacatctt-------attatagaactataggaaaaacttg |
11601902 |
T |
|
| Q |
310 |
tcatcctaaacttttgagatgatgattatttattgaaacataacgggtttggccaatttcttgtcaagattggatcataaaagattaattcttactnnnn |
409 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11601903 |
tcatcctaaactttttagatgatgattatttattgaaacataaagggtttggccaatttattgtcaagattggatcataaaagattaattcttactaaaa |
11602002 |
T |
|
| Q |
410 |
nnncccgaatttgttttatttgctgaactatggatggattctaaagattctcccttaaactgactcaatataaaatgtcctaagctattttcctttaatg |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11602003 |
aaacccgaatttgttttatttgctgaactatggatggattctaaagattctcccttaaactgactcaatataatatgtcctaagctattttcctttaatg |
11602102 |
T |
|
| Q |
510 |
ctatacaaaacgtttcacaatatttatggagcacttgtnnnnnnntc----ctcttgtagatacttttctcttttttaataaagtttttgagtttaacgg |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11602103 |
ctatacaaaacgtttcacaatatttatggagcacttgtccccccccccacacacttgtagatactgttctcttttttaataaagtttttgagtttaacgg |
11602202 |
T |
|
| Q |
606 |
catatgatgggggttcattg |
625 |
Q |
| |
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|||||||||||||||||||| |
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| T |
11602203 |
catatgatgggggttcattg |
11602222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 600
Target Start/End: Original strand, 1110417 - 1110461
Alignment:
| Q |
556 |
cctcttgtagatacttttctcttttttaataaagtttttgagttt |
600 |
Q |
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| T |
1110417 |
cctcttgtatatacttttctcttttttaataatatttttgagttt |
1110461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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