View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21043_low_9 (Length: 561)
Name: NF21043_low_9
Description: NF21043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21043_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 23 - 547
Target Start/End: Original strand, 16385893 - 16386417
Alignment:
| Q |
23 |
aataacatcccaaacgacgctgttccgctcatcgatctcaacgtcgaatacagtccttctctcccatcacccaccccaatcgaaaaacaatctcaaaaac |
122 |
Q |
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| T |
16385893 |
aataacatcccaaacgatgctgttccgctcatcgatctcaacgtcgaatacagtccttctctcccatcagccaccccaatcgaaaaacaatctcaaaaac |
16385992 |
T |
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| Q |
123 |
aggacattgaatttgaagtcgatgaggatgaaattttatgctgtgtgtgccatagcacagacgctaatgcggaggatccaatcgttttctgcgacggttg |
222 |
Q |
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| T |
16385993 |
aggacattgaatttgaagtcgatgatgatgaaattttatgctgtgtgtgccatagcacagacgctaatgctgaggatccaatcgttttctgcgacggttg |
16386092 |
T |
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| Q |
223 |
taacttaatggtccatgcttcctgctatggtaaccctctggtgaaacagatcccagagggtgattggttttgtgatcagtgtcgttttaaaaacgacact |
322 |
Q |
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| T |
16386093 |
taacttaatggtccatgcttcctgctatggtaaccctctggtgaaacagatcccagatggtgactggttttgcgatcagtgtcgttttaaaaacgacatt |
16386192 |
T |
|
| Q |
323 |
gatactgacaccggtccaattcgttgctccctctgtcctacgaaagagggagcaatgaaacaaacaacagatggaaagtgggtccatctggtttgtgctt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16386193 |
gatactgacaccggtccaattcgttgctccctctgtcctacgaaagagggagcaatgaaacaaacaacagatggaaagtgggtccatctggtttgtgctt |
16386292 |
T |
|
| Q |
423 |
tacttgtgcctgaagtgttttttgtggatccagaagggagagaagggattgattgttctaaaattccaaagaagaggtggttggagaagtgttatgtatg |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16386293 |
tacttgtgcctgaagtgttttttgtggatccagaagggagagaagggattgattgttctaaaattccaaagaagaggtggttggagaagtgttatgtatg |
16386392 |
T |
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| Q |
523 |
tgggtgctttgatggatgtgctttg |
547 |
Q |
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| T |
16386393 |
tgggtgctttgatggatgtgctttg |
16386417 |
T |
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