View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21044_high_4 (Length: 278)
Name: NF21044_high_4
Description: NF21044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21044_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 475559 - 475325
Alignment:
| Q |
9 |
agcataggcatcagttaattagattaataatttaagttgtaa-tgttcaaattaatctttatttttagaacataaatattagtaccttccaatgtatatt |
107 |
Q |
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| T |
475559 |
agcataagcatcagttaattagattaataatttaagttgtaaatgttcaaattaatctttatttttagaacataaatattagtaccttccaatgtatatt |
475460 |
T |
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| Q |
108 |
tcctcatggagcaacaagacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatg |
207 |
Q |
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| T |
475459 |
tcctcatgaagcaacaagacagccaatatagtcacaagaattgttaagagaggactaaacactgcagagaagagaggtcctctctttgtaatgcaccatg |
475360 |
T |
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| Q |
208 |
cttggagacaaaatacaacggcagaccccataatt |
242 |
Q |
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| T |
475359 |
cttggagacaaaatacaaatgcagaccccataatt |
475325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 457889 - 457660
Alignment:
| Q |
17 |
catcagttaattagattaataatttaagttgtaatgttcaaattaatctttatttttagaacataaatattagtaccttccaatgtatatttcctcatgg |
116 |
Q |
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| T |
457889 |
catcatttagttagactaataattcaagttgtaatgttcaaattaatatttatttttagaacataaatattagtaccttccaatgtatatttcctcatga |
457790 |
T |
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| Q |
117 |
agcaaca----agacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatgcttgg |
212 |
Q |
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| T |
457789 |
agcagcaaggcaggcagctagtatagtcacaatcactgttaagagaggattaaacattgcagagaagagaggtcctctctttgtaatgcaccatgcttgg |
457690 |
T |
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| Q |
213 |
agacaaaatacaacggcagaccccataatt |
242 |
Q |
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| T |
457689 |
agacaaaatacaaatgcagaccccataatt |
457660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 57 - 242
Target Start/End: Complemental strand, 449553 - 449368
Alignment:
| Q |
57 |
aattaatctttatttttagaacataaatattagtaccttccaatgtatatttcctcatggagcaacaagacagccaatatagtcacaagaattgtcaaga |
156 |
Q |
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| T |
449553 |
aattaatcatcattgttagaacttaaatattaataccttccggtgtatatctcctcatgaagaaacaaggaagccaatacagtcacaattattgtgttga |
449454 |
T |
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| Q |
157 |
gaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatgcttggagacaaaatacaacggcagaccccataatt |
242 |
Q |
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| T |
449453 |
gaggactaaacattgcagagaagagaggtcctctctttttaatgcaccatgcttggagacaaaataaaactgctgatcccataatt |
449368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 480939 - 480818
Alignment:
| Q |
90 |
taccttccaatgtatatttcctcatggagcaacaagacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctc |
189 |
Q |
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| T |
480939 |
taccttccaatgtatatttcctcatgaagcaacaagatagcaaatacagtcacaattaatgtgaaaagaggattaaacatagcagagaagagaggtcctc |
480840 |
T |
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| Q |
190 |
tctttgcaatgcaccatgcttg |
211 |
Q |
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| T |
480839 |
tctttgaaatgcaccatgcttg |
480818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 468928 - 468795
Alignment:
| Q |
84 |
tattagtaccttccaatgtatatttcctcatggagcaacaagacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagag |
183 |
Q |
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| T |
468928 |
tattactaccttccaatgtatatttcctcatgaagcaaaatggcagccaatacagtacaaataattgtgaaaacaggagtaaacatagcagagaagagag |
468829 |
T |
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| Q |
184 |
gtcctctctttgcaatgcaccatgcttggagaca |
217 |
Q |
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| T |
468828 |
gtcctctccttgaaatgcaccatgcttggagaca |
468795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 27489790 - 27489923
Alignment:
| Q |
84 |
tattagtaccttccaatgtatatttcctcatggagcaacaagacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagag |
183 |
Q |
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| T |
27489790 |
tattactaccttccaatgtatacttcctcatgaagcaacaaaacagctaatacagtcacaattaatgtggaaacaggagtaaacatagcagagaatagag |
27489889 |
T |
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| Q |
184 |
gtcctctctttgcaatgcaccatgcttggagaca |
217 |
Q |
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| T |
27489890 |
gtcctcttcttgaaatgcaccatgcttggagaca |
27489923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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