View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21044_low_8 (Length: 250)
Name: NF21044_low_8
Description: NF21044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21044_low_8 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 17813992 - 17813752
Alignment:
| Q |
10 |
aagaatatgatgtgtttggcaaccatgtaaccccaaacaatcttgggtctgatgcttttcacatggttgttggaaagatgaataatcatatatcataaca |
109 |
Q |
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| T |
17813992 |
aagaaaatgatgtgtctggtagccatgtaaccccgaacaatcttgggtctgatgcttttcacatggttgttggaaagatggataatcatatatcataacc |
17813893 |
T |
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| Q |
110 |
tataaagcaaaagtctggccaaaagagtaaatcaaatacaacataaatctttgatgaccttaacaatgttattgtggatgtgtctgacaatgataatggc |
209 |
Q |
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| T |
17813892 |
tataaagcaagagtctggccaaaagaggaaatcaaatacaacataaatctttgatgaccttaacaatgttattgtggatgtgtctgacaatgataatgac |
17813793 |
T |
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| Q |
210 |
acaaaagaaaagaaagtgcataggtcagtgttgaatggaat |
250 |
Q |
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| T |
17813792 |
acaaaagaaaagaaagtgcataggtcagtgttgaatggaat |
17813752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 12001806 - 12002046
Alignment:
| Q |
10 |
aagaatatgatgtgtttggcaaccatgtaaccccaaacaatcttgggtctgatgcttttcacatggttgttggaaagatgaataatcatatatcataaca |
109 |
Q |
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| T |
12001806 |
aagaaaatgatgtgtttggcagccatgtaactccaaacaagattgggtctgatgcttttgacatggttgttggaaggatggataatcatagatcacaact |
12001905 |
T |
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| Q |
110 |
tataaagcaaaagtctggccaaaagagtaaatcaaatacaacataaatctttgatgaccttaacaatgttattgtggatgtgtctgacaatgataatggc |
209 |
Q |
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| T |
12001906 |
tataaagcaagagtctggccaaaagatgaaatccaaggcaacaaaaatcattgatgactttaacaatgttattgtggatgtgtctgacggtgatgatgac |
12002005 |
T |
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| Q |
210 |
acaaaagaaaagaaagtgcataggtcagtgttgaatggaat |
250 |
Q |
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| T |
12002006 |
acaaaaggaaagaaagtgcataggtcagtgatgaatggaat |
12002046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 9418299 - 9418205
Alignment:
| Q |
10 |
aagaatatgatgtgtttggcaaccatgtaaccccaaacaatcttgggtctgatgcttttcacatggttgttggaaagatgaataatcatatatca |
104 |
Q |
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| T |
9418299 |
aagaaaatgatgtgtttggcagccatgtaaccccaaacaagatagggtctgatgcttttgacatggttgttggaaggatggataatcatatatca |
9418205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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