View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21044_low_9 (Length: 240)
Name: NF21044_low_9
Description: NF21044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21044_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 14021649 - 14021453
Alignment:
| Q |
20 |
cagagtacgagggaagagcttgaagatgtttcgaatccaagtggtggaggaagtggttcaagtaagaagaggcataggacaaaattcacgcaggaacaga |
119 |
Q |
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| T |
14021649 |
cagagtacgagggaagagcttgaagatgtttcgaatccaagtggtggaggaagtggttcaagtaagaagaggcataggacaaaattcacgcaggaacaga |
14021550 |
T |
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| Q |
120 |
aggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaattctgtaatgaaagtggtgttaa |
216 |
Q |
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| T |
14021549 |
aggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggtttggttcaagaattctgtaatgaaagtggtgttaa |
14021453 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 46300827 - 46300744
Alignment:
| Q |
98 |
acaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggt |
181 |
Q |
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| T |
46300827 |
acaaaattcacgcaggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaaggt |
46300744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 56378749 - 56378802
Alignment:
| Q |
95 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaa |
148 |
Q |
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| T |
56378749 |
aggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaa |
56378802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 3683678 - 3683646
Alignment:
| Q |
98 |
acaaaattcacgcaggaacagaaggataagatg |
130 |
Q |
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| T |
3683678 |
acaaaattcacgcaggaacagaaggaaaagatg |
3683646 |
T |
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