View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21045_high_11 (Length: 459)

Name: NF21045_high_11
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21045_high_11
NF21045_high_11
[»] chr5 (10 HSPs)
chr5 (1-423)||(13711698-13712120)
chr5 (95-347)||(17392580-17392832)
chr5 (95-347)||(17383870-17384121)
chr5 (207-312)||(1347702-1347807)
chr5 (200-332)||(9619108-9619240)
chr5 (84-217)||(19653546-19653679)
chr5 (196-346)||(17377506-17377653)
chr5 (200-326)||(26536174-26536300)
chr5 (354-407)||(19807005-19807058)
chr5 (197-326)||(19969318-19969447)
[»] chr2 (1 HSPs)
chr2 (84-344)||(15784813-15785073)
[»] chr1 (1 HSPs)
chr1 (206-345)||(26052742-26052881)
[»] scaffold0009 (1 HSPs)
scaffold0009 (354-396)||(21847-21889)
[»] chr3 (1 HSPs)
chr3 (96-158)||(32224314-32224376)


Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 13711698 - 13712120
Alignment:
Q  1 ctccaaattggcagactatatgtatatcaaattatcaaatgaaaacactagatatacgtctaggaattttagatacatatcacatcaattccaacttaca 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||  ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  13711698 ctccaaattggcagactatatatatatcaaattatcgaatgattacactagctatacgtctaggaattctagatacatatcacatcaattccaacttaca 13711797  T
Q  101 tgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaatggtcataatccgtaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  13711798 tgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccattggttttgggcgaagagtataaaaaatggtcataatccgtaaa 13711897  T
Q  201 agtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtttataatttgacaagttgttaaatgagaggaaacacctt 300  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13711898 agtctctcattctgcaaaatatatgctgcaaatcggaaatcagcttccacaacttcatagtttataattcgacaagttgttaaatgagaggaaacacctt 13711997  T
Q  301 taggaacatgatcagggtattcccaaccctctatagttgttgaattcagatgacactgtcaatcagagacaaaacatgatttttcaaaatacttaaacat 400  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13711998 taggaacatgatcagggtattctcaaccctctatagttgttgaattcagatgacactgtcaatcagagacaaaacatgatttttcaaaatacttgaacat 13712097  T
Q  401 aatagaataacatataatctttc 423  Q
    |||||||||||||||||||||||    
T  13712098 aatagaataacatataatctttc 13712120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 95 - 347
Target Start/End: Complemental strand, 17392832 - 17392580
Alignment:
Q  95 cttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaatggtcataatc 194  Q
    ||||||||| ||||| ||| ||||||||||||||||||  ||||||||||| |  |||||| |||| |||||| |||||||||||  |||||||||||      
T  17392832 cttacatgtgggagacattcttggacaggaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatgatgaatggtcataact 17392733  T
Q  195 cgtaaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtttataatttgacaagttgttaaatgagaggaaa 294  Q
     |||||||||||||||||||||| ||||||| ||||||||| |||||||||||   | ||||||||| ||||| || | |  |||||| |||||| ||||    
T  17392732 tgtaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaa 17392633  T
Q  295 cacctttaggaacatgatcagggtattcccaaccctctatagttgttgaattc 347  Q
    ||| ||  ||||||||||| || |||||||||  |||||| ||||||||||||    
T  17392632 cacattctggaacatgatctggatattcccaatgctctatggttgttgaattc 17392580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 95 - 347
Target Start/End: Complemental strand, 17384121 - 17383870
Alignment:
Q  95 cttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaatggtcataatc 194  Q
    ||||||||  ||||||||  ||||||| ||||||||||  ||||||||||| |  |||||| |||| |||||| ||||||||||  ||||||||||| ||    
T  17384121 cttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatggtcata-tc 17384023  T
Q  195 cgtaaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtttataatttgacaagttgttaaatgagaggaaa 294  Q
     | |||||||||||||||||||| ||||||| ||||||||| ||||||||||||  | |||||||||  |||| || | |  |||||| || ||| ||||    
T  17384022 tgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcccaagcttcatagtgcataacttcaaattttgttagattagacgaaa 17383923  T
Q  295 cacctttaggaacatgatcagggtattcccaaccctctatagttgttgaattc 347  Q
    ||| ||  ||||||||||| || |||||||||  ||||||  ||| |||||||    
T  17383922 cacattctggaacatgatctggatattcccaatgctctatgcttgctgaattc 17383870  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 1347702 - 1347807
Alignment:
Q  207 gcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtttataatttgacaagttgttaaatgagaggaaacacctttaggaa 306  Q
    ||||||| ||| ||||| | ||| ||||||||||||||||||||| ||| ||||| ||| || | ||| ||||| | |||||||||||||| || |||||    
T  1347702 gcattcttcaatatataggttgcaaatcggaaatcagcttccacagcttgatagtgtatgatattacatgttgtaagatgagaggaaacacattgaggaa 1347801  T
Q  307 catgat 312  Q
    ||||||    
T  1347802 catgat 1347807  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 9619240 - 9619108
Alignment:
Q  200 aagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtttataatttgacaagttgttaaatgagaggaaacacct 299  Q
    ||||||||||||||| || |||||   ||| ||||| ||||||| ||||||| ||  ||||| || ||| | ||| |||||||||||||| ||||||| |    
T  9619240 aagtctcgcattctgaaaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatgttacatgttgttaaatgagatgaaacacat 9619141  T
Q  300 ttaggaacatgatcagggtattcccaaccctct 332  Q
    | |||||||||||  ||||||| |||| |||||    
T  9619140 tcaggaacatgatgtgggtatttccaatcctct 9619108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 19653546 - 19653679
Alignment:
Q  84 atcaattccaacttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaa 183  Q
    |||| ||||| |||||| || || |||||||| ||||||||||||||||| | | |||| ||||  ||| ||||||||||  ||  ||||||| | ||||    
T  19653546 atcacttccagcttacacgtgggcgagattgtaggacaggaggataaatcctttgaaaaatgggggctccccgttggtttcaggtcaagagtacggaaaa 19653645  T
Q  184 tggtcataatccgtaaaagtctcgcattctgcaa 217  Q
    |||||||||   |||| |||||||||||| ||||    
T  19653646 tggtcataacttgtaagagtctcgcattcagcaa 19653679  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 346
Target Start/End: Complemental strand, 17377653 - 17377506
Alignment:
Q  196 gtaaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtttataatttgacaagttgttaaatgagaggaaac 295  Q
    ||||||||||||||||  |||| ||||||| ||||||||| |||||||||||   | ||||| ||  ||||| || | |  |||||| |||||| |||||    
T  17377653 gtaaaagtctcgcatttcgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcagagcctataactttaaagtttgttagatgagacgaaac 17377554  T
Q  296 acctttaggaacatgatcagggtattcccaaccctctatagttgttgaatt 346  Q
    || ||  ||||||||||| || |||||||||   ||||| |||||||||||    
T  17377553 acattctggaacatgatctggatattcccaa---tctatggttgttgaatt 17377506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 326
Target Start/End: Complemental strand, 26536300 - 26536174
Alignment:
Q  200 aagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtttataatttgacaagttgttaaatgagaggaaacacct 299  Q
    |||||| ||||||| ||||||||||  ||| ||||| ||||| |||||  || ||||||||||||||||   ||| ||||| | ||||||   |||||      
T  26536300 aagtctagcattcttcaagatatatattgcaaatcgaaaatccgcttctgcagcttcatagtttataatgctacatgttgtaagatgagacctaacactc 26536201  T
Q  300 ttaggaacatgatcagggtattcccaa 326  Q
    | |||||||||||| ||||||| ||||    
T  26536200 tcaggaacatgatctgggtatttccaa 26536174  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Complemental strand, 19807058 - 19807005
Alignment:
Q  354 cactgtcaatcagagacaaaacatgatttttcaaaatacttaaacataatagaa 407  Q
    |||||||||||||| |||||| ||||||| | ||||||||| ||||||| ||||    
T  19807058 cactgtcaatcagaaacaaaatatgatttgtaaaaatacttgaacataagagaa 19807005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 326
Target Start/End: Original strand, 19969318 - 19969447
Alignment:
Q  197 taaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtttataatttgacaagttgttaaatgagaggaaaca 296  Q
    |||| |||| || |||||||| ||||| | ||| ||||| ||||||||||||||| ||| ||||| | |||| | ||| ||||| | ||||||  |||||    
T  19969318 taaatgtctagcgttctgcaaaatatacgttgcaaatcgaaaatcagcttccacagcttgatagtgtgtaatattacatgttgtaagatgagacaaaaca 19969417  T
Q  297 cctttaggaacatgatcagggtattcccaa 326  Q
    | ||  ||||||||||  ||||||| ||||    
T  19969418 cattcgggaacatgatatgggtatttccaa 19969447  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 344
Target Start/End: Complemental strand, 15785073 - 15784813
Alignment:
Q  84 atcaattccaacttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaa 183  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||| || ||||||  ||  |  |||||  |||||||||||  ||||||| |  |||    
T  15785073 atcaattccagcttacatgtgggagagatttttggacaggaggataagtcttctaaattttttgggctctcaattggttttggggtaagagtacggcaaa 15784974  T
Q  184 tggtcataatccgtaaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtttataatttgacaagttgttaa 283  Q
    ||||||||| | |||||||||| |||||||  || || || | ||||||||| |||||||| |||| | ||||||||  |  ||||  ||| |||||||     
T  15784973 tggtcataacctgtaaaagtcttgcattctttaaaatgtaagatgcgaatcgaaaatcagcctccatagcttcatagagttcaattctacacgttgttag 15784874  T
Q  284 atgagaggaaacacctttaggaacatgatcagggtattcccaaccctctatagttgttgaa 344  Q
    ||||||||| || | ||||||||||||||| ||||||||||||  |||||| |||||||||    
T  15784873 atgagaggagacgcatttaggaacatgatccgggtattcccaattctctatggttgttgaa 15784813  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 345
Target Start/End: Original strand, 26052742 - 26052881
Alignment:
Q  206 cgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaa-cttcatagtttataatttgacaagttgttaaatgagaggaaacacctttagg 304  Q
    |||||||||||| ||||||| ||||||||| | ||||| || ||||| ||||||||| ||||| || | |  |||||| |||||| ||||||| ||  ||    
T  26052742 cgcattctgcaaaatatatgttgcgaatcgaatatcag-tttcacaagcttcatagtctataacttcaaattttgttagatgagatgaaacacattctgg 26052840  T
Q  305 aacatgatcagggtattcccaaccctctatagttgttgaat 345  Q
    ||||||||| || |||||||||  |||||| ||||||||||    
T  26052841 aacatgatctggatattcccaatgctctatggttgttgaat 26052881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 21889 - 21847
Alignment:
Q  354 cactgtcaatcagagacaaaacatgatttttcaaaatacttaa 396  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||    
T  21889 cactgtcaatcagagacaaaatatgatttgtcaaaatagttaa 21847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 32224314 - 32224376
Alignment:
Q  96 ttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgtt 158  Q
    |||||||| ||||||||  ||  ||| |||||||||||||||||||||||||  |||||||||    
T  32224314 ttacatgttggagagatccttccacatgaggataaatcatctaaaaattggggactctccgtt 32224376  T

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