View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_high_16 (Length: 423)
Name: NF21045_high_16
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_high_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 81 - 423
Target Start/End: Original strand, 13084841 - 13085185
Alignment:
| Q |
81 |
acaagaagacaccagggctaagagcaccctacctagtagaacaacctaaagaacttgggccccacccaaactctcaaagcacaaatcaaatccatcttcg |
180 |
Q |
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| T |
13084841 |
acaagaagacaccaaggctaagagcaccctacctagtagaacaacctaaagaacttgggccccacccaaactctcaaaacacaaatcaaatccatctccg |
13084940 |
T |
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| Q |
181 |
gccaacacacagaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaagtaatgatgtgaatgttgtatggcaaagaaccacttc |
280 |
Q |
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| T |
13084941 |
accaacacaccgaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaagcaatgatgtgaatggtgtatggcaaagaaccacttc |
13085040 |
T |
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| Q |
281 |
cattaatgaaattggattctatccagcagatgctcaacctcaacaagtcttcc--nnnnnnnnnngtaaattatttcggactttccaaatagatcacaca |
378 |
Q |
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| T |
13085041 |
cattaatgaaattggattctatcgagtagatgctcaacctcaacaagtcttccaaaaaaaaaaaagtaaattatttcggactttccaaatagatcacaca |
13085140 |
T |
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| Q |
379 |
gttgaattctagaccaaaaggaaacctagcctataccgcctcttt |
423 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
13085141 |
gttgcatgctagaccaaaaggaaacctagcctataccgcctcttt |
13085185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 81 - 243
Target Start/End: Original strand, 13013685 - 13013847
Alignment:
| Q |
81 |
acaagaagacaccagggctaagagcaccctacctagtagaacaacctaaagaacttgggccccacccaaactctcaaagcacaaatcaaatccatcttcg |
180 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13013685 |
acaagaagacaccaaggctaagagcaccctacctagtagaacaacctaaagaacttgggccccacccaaactctcaaagcacaaatcaaatccatctcca |
13013784 |
T |
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| Q |
181 |
gccaacacacagaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaa |
243 |
Q |
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| T |
13013785 |
accaacacaccgaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaa |
13013847 |
T |
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