View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_high_17 (Length: 421)
Name: NF21045_high_17
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 45107806 - 45107396
Alignment:
| Q |
1 |
cattggtttatgtttctctatctgggatccaaaacatagaaatgtttttaacaaagagtccattgaaaaaggtataatactgctaggacacaatacaact |
100 |
Q |
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| T |
45107806 |
cattggtttatgtttctctatctgggatccaaaacatagaaatgtttttaacaaagagtccattgaaaaaggtataatactgctaggacacaatacaact |
45107707 |
T |
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| Q |
101 |
tcatttgcagtgattgtgtctctcttaaaagaccttaaacttctaaactctgaacttggaagattagcattatctgttgctttggttggtgagatattga |
200 |
Q |
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| T |
45107706 |
tcatttgcagtgattgtgtctctcttaaaagaccttaaacttctaaactctgaacttggaagattagcattatctgttgctttggttggtgagatattga |
45107607 |
T |
|
| Q |
201 |
gtaacatttttataactgttacctcaactctgcttgatcagggtcattatatttcacctgtcatgaggttgggatatttatttgccatcactctcttcat |
300 |
Q |
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| T |
45107606 |
gtaacatttttataactgttacctcaactctgcttgatcagggtcattatatttcacctgtcatgaggttgggatatttatttgccatcactctcttcat |
45107507 |
T |
|
| Q |
301 |
tttattaatctaccgtcctgcaatgttttggattgttgaacatactcctgaaggaaaagaagttaaggatatttacatcaacattgttattgggattctc |
400 |
Q |
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| T |
45107506 |
tttattaatctaccgtcctgcaatgttttggattgttgaacatactcctgaaggaaaagaagttaaggatatttacatcaacattgttattgggattctc |
45107407 |
T |
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| Q |
401 |
ttttgtctgtg |
411 |
Q |
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| T |
45107406 |
ttttgtttgtg |
45107396 |
T |
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