View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21045_high_19 (Length: 375)
Name: NF21045_high_19
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 366
Target Start/End: Original strand, 41968011 - 41968375
Alignment:
| Q |
15 |
cttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcattttgcacaacaatacttgcaata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41968011 |
cttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcatttggcacaacaatacttgcaata |
41968110 |
T |
|
| Q |
115 |
gaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttc-----------att--ttagtacatcat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
41968111 |
gaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttcaaccatgcaatattagttagtacatcat |
41968210 |
T |
|
| Q |
202 |
tttagtgaatgaatgttgtaacatcaaattttaacaataaataaaaagtaaagaaagannnnnnnnattatagattttatatcaacaatatcttttgtaa |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41968211 |
tttagtgaatgaatgttgtaacatcaaattttaacaataaataaaaagtaaagaaagattttttttattatagattttatatcaacaatatcttttgtaa |
41968310 |
T |
|
| Q |
302 |
aatttatttatgagtgaagctatatccttaattaaatcaataccttctggtttaagacttccttc |
366 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41968311 |
aatttatttatgagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttc |
41968375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 16100246 - 16100168
Alignment:
| Q |
37 |
atagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcattttgcacaacaatacttgcaatag |
115 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| ||||||| || |||||||| |||||||||||||| || ||||||||| |
|
|
| T |
16100246 |
atagcatggacattcttccttgtgaccatatgttcctgatgggacacacaaacattttgcacaacagtagttgcaatag |
16100168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 16047081 - 16047017
Alignment:
| Q |
51 |
cttccttgtttccataagttcctggaggtacacacaagcattttgcacaacaatacttgcaatag |
115 |
Q |
| |
|
||||||||| ||||| ||||||| || |||||||| |||||||||||||| || ||||||||| |
|
|
| T |
16047081 |
cttccttgtgaccatatgttcctgatgggacacacaaacattttgcacaacagtagttgcaatag |
16047017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 1235019 - 1235191
Alignment:
| Q |
15 |
cttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcattttgcacaacaatacttgcaata |
114 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235019 |
cttctttagtcttccagtcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcattttgcacaacaatacttgcaata |
1235118 |
T |
|
| Q |
115 |
gaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttca |
187 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235119 |
gaacaaacatggttttctgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttca |
1235191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 1235334 - 1235409
Alignment:
| Q |
291 |
atcttttgtaaaatttatttatgagtgaagctatatccttaattaaatcaataccttctggtttaagacttccttc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235334 |
atcttttgtaaaatttatttatgagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttc |
1235409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 1235232 - 1235278
Alignment:
| Q |
209 |
aatgaatgttgtaacatcaaattttaacaataaataaaaagtaaaga |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
1235232 |
aatgaatgttgtaacatcaaattttaacaataaacaaaaaataaaga |
1235278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 35408955 - 35408853
Alignment:
| Q |
34 |
gttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcattttgcacaacaatacttgcaatagaacaaacatggttttttg |
133 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||| | || |||||||| |||||||||||||| | ||||| |||||||||| || || ||| |
|
|
| T |
35408955 |
gttatagcacggacattcttgtttgttgccataagttccagatggaacacacaaacattttgcacaacactttttgcagaagaacaaacacggcttcttg |
35408856 |
T |
|
| Q |
134 |
tga |
136 |
Q |
| |
|
||| |
|
|
| T |
35408855 |
tga |
35408853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 35649537 - 35649673
Alignment:
| Q |
19 |
tttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcattttgcacaacaatacttgcaatagaac |
118 |
Q |
| |
|
|||||||||||| | ||| ||||| || ||||| | |||||| |||||| || ||||| |||||||| || || |||||||| | |||||| |||| |
|
|
| T |
35649537 |
tttggtcttccagttgttgtagcaagggcaaacctgcttgttgccataatagccaggaggcacacacaaacacttggcacaacacttgttgcaaaagaat |
35649636 |
T |
|
| Q |
119 |
aaacatggttttttgtgatgtgtttttgagcatctat |
155 |
Q |
| |
|
|| ||||| || |||| ||||| ||||||||||||| |
|
|
| T |
35649637 |
aagcatggcttcttgtattgtgtgtttgagcatctat |
35649673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University