View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_high_20 (Length: 357)
Name: NF21045_high_20
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 56158883 - 56159048
Alignment:
| Q |
1 |
agaaagttgcaaggtcagaattatatgtgaagggaaggaagtaaatgagcaaatgatgttatcctcaccctctcctcagatatttactgctacca---ac |
97 |
Q |
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| T |
56158883 |
agaaagttgcaaggttagaattatatgtgaagggaaggaagtaaatgagcaaatgatgttatcctcaccctctcctcagatatttactgctaccaatgat |
56158982 |
T |
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| Q |
98 |
gatacttttgtcaacactaaagaaaatgattcagttttatgttgtttcaagcccaagtttaaatga |
163 |
Q |
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| T |
56158983 |
gatacttttgtcaacactaaagaaaatgattcagttttatgttgtttcaagcccaagtttaaatga |
56159048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 220 - 357
Target Start/End: Complemental strand, 56159436 - 56159305
Alignment:
| Q |
220 |
tgctaataatattataatcgtaataaattgttttgattcagttttaacactactacaatgataaatgaaaggcaaaacacaaagcacactaaataaaagc |
319 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56159436 |
tgctaataatattataatcgtaatcaattgttttcattcagttttaacactac---aatgataaatgaaaggcaaaacacaaagcacactaaataaaagc |
56159340 |
T |
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| Q |
320 |
atataaatgttgaagaattatgaagtctagcttttatt |
357 |
Q |
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| T |
56159339 |
atataaatgtt---gaattatgaagtctagcttttatt |
56159305 |
T |
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