View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_high_22 (Length: 348)
Name: NF21045_high_22
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_high_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 348
Target Start/End: Original strand, 32202964 - 32203309
Alignment:
| Q |
3 |
cagatcacaccttatttttgaagagaggagaaggtaaaattaccgccttgattatctatgtagatgatatgatagttacaggaaatgaccaagatgaaat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32202964 |
cagatcacaccttatttttgaagagaggagaaggtaaaattaccgccttgattatctatgtagatgatatgatagttacaggaaataaccaagatgaaat |
32203063 |
T |
|
| Q |
103 |
ttctagtttgcaaaaataccttacttatgaatttgagatgaaacaacttggaaacctcaaatattttctgggtattgaagtagcgagatcaaaacatggt |
202 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32203064 |
ttctagtttgcaaaaataccttacttctaaatttgagatgaaacaacttggaaacctcaaatattttatgggtattgaagtagcgagatcaaaacatggt |
32203163 |
T |
|
| Q |
203 |
atttttctatgccaaagaaagtatactcttgatttgctatctgaaactgagttgcttgcctctaaaccagcagaaactcctattgaacagaaccataagc |
302 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32203164 |
atttttctatgccaaagaaagtatactcttgatttgctatctgaaactgggttgcttgcctctaaatcagcagaaactcctattgaacagaaccataagc |
32203263 |
T |
|
| Q |
303 |
tctttcattgtctaaactcaaacatcacagataaagggaggtacca |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203264 |
tctttcattgtctaaactcaaacatcacagataaagggaggtacca |
32203309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 346
Target Start/End: Complemental strand, 40454683 - 40454340
Alignment:
| Q |
3 |
cagatcacaccttatttttgaagagaggagaaggtaaaattaccgccttgattatctatgtagatgatatgatagttacaggaaatgaccaagatgaaat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40454683 |
cagatcacaccttatttttgaagagaggagaaggtaaaattaccgccttgattatctatgtagatgatatgatagttacaggaaataaccaagatgaaat |
40454584 |
T |
|
| Q |
103 |
ttctagtttgcaaaaataccttacttatgaatttgagatgaaacaacttggaaacctcaaatattttctgggtattgaagtagcgagatcaaaacatggt |
202 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40454583 |
ttctagtttgcaaaaataccttacttctaaatttgagatgaaacaacttggaaacctcaaatattttatgggtattgaagtagcgagatcaaaacatggt |
40454484 |
T |
|
| Q |
203 |
atttttctatgccaaagaaagtatactcttgatttgctatctgaaactgagttgcttgcctctaaaccagcagaaactcctattgaacagaaccataagc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40454483 |
atttttctatgccaaagaaagtatactcttgatttgctatctgaaactgggttgcttgcctctaaaacagcagaaactcctattgaacagaaccataagc |
40454384 |
T |
|
| Q |
303 |
tctttcattgtctaaactcaaacatcacagataaagggaggtac |
346 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
40454383 |
tctttcattatctaaactcaaacatcacagataaagggaggtac |
40454340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 9718394 - 9718090
Alignment:
| Q |
5 |
gatcacaccttatttttgaagagaggagaaggtaaaattaccgccttgattatctatgtagatgatatgatagttacaggaaatgaccaagatgaaattt |
104 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9718394 |
gatcataccttatttttgaagaaaggagaaggtaaaattacagccttaattatctatgtagatgatatgatagttacaggaaatgaccaagatgagattt |
9718295 |
T |
|
| Q |
105 |
ctagtttgcaaaaataccttacttatgaatttgagatgaaacaacttggaaacctcaaatattttctgggtattgaagtagcgagatcaaaacatggtat |
204 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |
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| T |
9718294 |
ctagtttgcaaaaatatcttgcatctgaatttgagatgaaacaacttggaaacctcaaatattttttgggtattgaagtagctagatcaaaccatggtat |
9718195 |
T |
|
| Q |
205 |
ttttctatgccaaagaaagtatactcttgatttgctatctgaaactgagttgcttgcctctaaaccagcagaaactcctattgaacagaaccataagctc |
304 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||| | |||||||| || || || |||||||| || |||| ||| |
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| T |
9718194 |
ttttctatgtcaaagaaagtatactattgatttattatctgaaactgggttgcttgggtgtaaaccagttgataccccaattgaacaaaatcatatgctt |
9718095 |
T |
|
| Q |
305 |
tttca |
309 |
Q |
| |
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||||| |
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| T |
9718094 |
tttca |
9718090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 27514959 - 27514655
Alignment:
| Q |
5 |
gatcacaccttatttttgaagagaggagaaggtaaaattaccgccttgattatctatgtagatgatatgatagttacaggaaatgaccaagatgaaattt |
104 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
27514959 |
gatcataccttatttttgaagaaaggagaaggtaaaattacagccttaattatctatgtagatgatatgatagttacaggaaatgatcaagatgagattt |
27514860 |
T |
|
| Q |
105 |
ctagtttgcaaaaataccttacttatgaatttgagatgaaacaacttggaaacctcaaatattttctgggtattgaagtagcgagatcaaaacatggtat |
204 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |
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| T |
27514859 |
ctagtttgcaaaaatatcttgcatctgaatttgagatgaaacaacttggaaacctcaaatattttttgggtattgaagtagctagatcaaaccatggtat |
27514760 |
T |
|
| Q |
205 |
ttttctatgccaaagaaagtatactcttgatttgctatctgaaactgagttgcttgcctctaaaccagcagaaactcctattgaacagaaccataagctc |
304 |
Q |
| |
|
||||||||| |||| ||| |||||| ||||||| |||||||||||| |||||||| | |||||||| || || || |||||||| || |||| ||| |
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|
| T |
27514759 |
ttttctatgtcaaataaattatactattgatttattatctgaaactgggttgcttgggtgtaaaccagttgataccccaattgaacaaaatcatatgctt |
27514660 |
T |
|
| Q |
305 |
tttca |
309 |
Q |
| |
|
||||| |
|
|
| T |
27514659 |
tttca |
27514655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 309
Target Start/End: Original strand, 39744743 - 39745047
Alignment:
| Q |
5 |
gatcacaccttatttttgaagagaggagaaggtaaaattaccgccttgattatctatgtagatgatatgatagttacaggaaatgaccaagatgaaattt |
104 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39744743 |
gatcataccttatttttgaagaaaggagaaggtaaaattacagccttaattatctatttagatgatatgatagttacaggaaatgaccaagatgagattt |
39744842 |
T |
|
| Q |
105 |
ctagtttgcaaaaataccttacttatgaatttgagatgaaacaacttggaaacctcaaatattttctgggtattgaagtagcgagatcaaaacatggtat |
204 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |
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|
| T |
39744843 |
ctagtttgcaaaaatatcttgcatctgaatttgagatgaaacaacttggaaacctcaaatattttttgggtattgaagtagctagatcaaaccatggtat |
39744942 |
T |
|
| Q |
205 |
ttttctatgccaaagaaagtatactcttgatttgctatctgaaactgagttgcttgcctctaaaccagcagaaactcctattgaacagaaccataagctc |
304 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||| | |||||||| || || || |||||||| || |||| ||| |
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|
| T |
39744943 |
ttttctatgtcaaagaaagtatactattgatttattatctgaaactgggttgcttgggtgtaaaccagttgataccccaattgaacaaaatcatatgctt |
39745042 |
T |
|
| Q |
305 |
tttca |
309 |
Q |
| |
|
||||| |
|
|
| T |
39745043 |
tttca |
39745047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 56390716 - 56390412
Alignment:
| Q |
5 |
gatcacaccttatttttgaagagaggagaaggtaaaattaccgccttgattatctatgtagatgatatgatagttacaggaaatgaccaagatgaaattt |
104 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
56390716 |
gatcataccttatttttgaagaaaggagaaggtaaaattacagccttaattatctatttagatgatatgatagttacaggaaatgaccaagatgagattt |
56390617 |
T |
|
| Q |
105 |
ctagtttgcaaaaataccttacttatgaatttgagatgaaacaacttggaaacctcaaatattttctgggtattgaagtagcgagatcaaaacatggtat |
204 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |
|
|
| T |
56390616 |
ctagtttgcaaaaatatcttgcatctgaatttgagatgaaacaacttggaaacctcaaatattttttgggtattgaagtagctagatcaaaccatggtat |
56390517 |
T |
|
| Q |
205 |
ttttctatgccaaagaaagtatactcttgatttgctatctgaaactgagttgcttgcctctaaaccagcagaaactcctattgaacagaaccataagctc |
304 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||| | |||||||| || || || |||||||| || |||| ||| |
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|
| T |
56390516 |
ttttctatgtcaaagaaagtatactattgatttattatctgaaactgggttgcttgggtgtaaaccagttgataccccaattgaacaaaatcatatgctt |
56390417 |
T |
|
| Q |
305 |
tttca |
309 |
Q |
| |
|
||||| |
|
|
| T |
56390416 |
tttca |
56390412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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