View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21045_high_23 (Length: 324)

Name: NF21045_high_23
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21045_high_23
NF21045_high_23
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-309)||(50323-50631)
[»] chr3 (25 HSPs)
chr3 (100-309)||(10434562-10434771)
chr3 (125-309)||(10579968-10580152)
chr3 (123-309)||(10376363-10376549)
chr3 (100-309)||(10364316-10364525)
chr3 (152-309)||(10195067-10195224)
chr3 (87-309)||(9838190-9838412)
chr3 (87-309)||(9849068-9849290)
chr3 (152-309)||(10088184-10088341)
chr3 (124-309)||(11768600-11768785)
chr3 (124-309)||(10076632-10076817)
chr3 (122-303)||(13289029-13289210)
chr3 (123-223)||(10505150-10505250)
chr3 (122-303)||(13160344-13160525)
chr3 (122-303)||(13332268-13332449)
chr3 (122-303)||(13170395-13170576)
chr3 (122-303)||(13343453-13343634)
chr3 (188-256)||(10084150-10084218)
chr3 (1-71)||(10376658-10376728)
chr3 (188-253)||(10191073-10191138)
chr3 (1-70)||(10364611-10364680)
chr3 (195-309)||(11131544-11131658)
chr3 (1-64)||(10076442-10076505)
chr3 (195-309)||(10888743-10888857)
chr3 (195-309)||(11149372-11149486)
chr3 (195-309)||(8860723-8860837)
[»] chr2 (2 HSPs)
chr2 (122-309)||(26906261-26906448)
chr2 (147-280)||(3438480-3438617)
[»] chr8 (2 HSPs)
chr8 (103-249)||(44958256-44958402)
chr8 (271-309)||(44958227-44958265)
[»] scaffold0002 (2 HSPs)
scaffold0002 (122-303)||(146463-146644)
scaffold0002 (122-303)||(136412-136593)
[»] chr5 (1 HSPs)
chr5 (122-283)||(19956981-19957146)
[»] chr7 (1 HSPs)
chr7 (197-304)||(29836112-29836219)


Alignment Details
Target: scaffold0083 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 50631 - 50323
Alignment:
Q  1 caaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgctcgtaatttccatcaaaatttcatactagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50631 caaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgagtcttctttgagtcattgctcgtaatttccatcaaaatttcatactagtt 50532  T
Q  101 ggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  50531 ggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctcactgcaactgttcagaccttagttgagaaacttgcttcaa 50432  T
Q  201 cagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50431 cagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgc 50332  T
Q  301 agaggagaa 309  Q
     ||||||||    
T  50331 tgaggagaa 50323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 10434771 - 10434562
Alignment:
Q  100 tggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttca 199  Q
    ||||||| ||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  10434771 tggtttgctttaacaatatcattagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttca 10434672  T
Q  200 acagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatg 299  Q
    | |||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10434671 aaagagtttcgtgattacatcaaaaacaccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatg 10434572  T
Q  300 cagaggagaa 309  Q
    ||||||||||    
T  10434571 cagaggagaa 10434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 125 - 309
Target Start/End: Original strand, 10579968 - 10580152
Alignment:
Q  125 aagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaaa 224  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  10579968 aagatggctgcaactatgattggaggtgctttcctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaa 10580067  T
Q  225 acactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaa 309  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10580068 acactaagctcaatgtctcactcttgaggcagcttaaaacaacactgctcactcttcaagttgtgctggatgatgcagaggagaa 10580152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 123 - 309
Target Start/End: Complemental strand, 10376549 - 10376363
Alignment:
Q  123 agaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaa 222  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  10376549 agaagatggctgcaactatgataggaggtgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatcaa 10376450  T
Q  223 aaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaa 309  Q
    |||||| || |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10376449 aaacaccaaactcaatgtctcactcttgaggcagttaaaaacaacactgctcactcttcaagttgtgctggatgatgcagaggagaa 10376363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 10364525 - 10364316
Alignment:
Q  100 tggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttca 199  Q
    ||||||| ||||||||||||   |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  10364525 tggtttgctttaacaatatcaacagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcagaccttagttgagaaacttgcttca 10364426  T
Q  200 acagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatg 299  Q
    ||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| |  |||||||||| |||||||||||||||||||||||||| |    
T  10364425 acagagtttcttgattacatcaaaaacaccaaactcaatgactcactcttgaggcagttacaaacaacactgctcactcttcaagttgtgctggatgacg 10364326  T
Q  300 cagaggagaa 309  Q
    |||| |||||    
T  10364325 cagaagagaa 10364316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 152 - 309
Target Start/End: Original strand, 10195067 - 10195224
Alignment:
Q  152 gcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttga 251  Q
    |||||||||||||||||| ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||    
T  10195067 gcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtctcactcttga 10195166  T
Q  252 ggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaa 309  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  10195167 ggcagctgaaaacaacactgctcactcttcaagttgtgctggatgatgcggaggagaa 10195224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 87 - 309
Target Start/End: Original strand, 9838190 - 9838412
Alignment:
Q  87 atttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtaga 186  Q
    |||||||||||  || |||| ||| |||| |||   |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  9838190 atttcatactacctgatttgcttttacaagatcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttga 9838289  T
Q  187 gaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagtt 286  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  || ||||  | |||| |||||| | |    
T  9838290 gaaacttgcttcaactgagtttcgtgattacatcaaaaacactaagctcaatgtctcactcttgaggcagttacaagcaaccatgctcaatcttcaggct 9838389  T
Q  287 gtgctggatgatgcagaggagaa 309  Q
    || || |||||||||||||||||    
T  9838390 gttctagatgatgcagaggagaa 9838412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 87 - 309
Target Start/End: Original strand, 9849068 - 9849290
Alignment:
Q  87 atttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtaga 186  Q
    |||||||||||  || |||| ||| |||| |||   |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  9849068 atttcatactacctgatttgcttttacaagatcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttga 9849167  T
Q  187 gaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagtt 286  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  || ||||  | |||| |||||| | |    
T  9849168 gaaacttgcttcaactgagtttcgtgattacatcaaaaacactaagctcaatgtctcactcttgaggcagttacaagcaaccatgctcaatcttcaggct 9849267  T
Q  287 gtgctggatgatgcagaggagaa 309  Q
    || || |||||||||||||||||    
T  9849268 gttctagatgatgcagaggagaa 9849290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 152 - 309
Target Start/End: Original strand, 10088184 - 10088341
Alignment:
Q  152 gcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttga 251  Q
    |||||||||||||||||| ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||| ||    
T  10088184 gcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtctcactctcga 10088283  T
Q  252 ggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaa 309  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  10088284 ggcagctgaaaacaacactgctcactcttcaagttgtgctggatgatgcggaggagaa 10088341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 309
Target Start/End: Original strand, 11768600 - 11768785
Alignment:
Q  124 gaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaa 223  Q
    ||||||||| ||| ||||||| ||||| ||||||||||| |||||| | || || ||  | |||||||||||||||||||||||||||||||||||||||    
T  11768600 gaagatggcggcaactatgataggaggcgcttttctctcggcaactatgcaaaccttgtttgagaaacttgcttcaacagagtttcttgattacatcaaa 11768699  T
Q  224 aacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaa 309  Q
    ||||| ||||| ||||||||||||||||||||  | |||||||| || ||||| ||||| | ||| ||||||||||| ||||||||    
T  11768700 aacaccaagctgaatgtctcactcttgaggcaattaaaaacaaccctgctcacacttcaggctgtactggatgatgcggaggagaa 11768785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 124 - 309
Target Start/End: Original strand, 10076632 - 10076817
Alignment:
Q  124 gaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaa 223  Q
    ||||||||||||| ||||||| ||||| |||||||||  ||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||    
T  10076632 gaagatggctgcaactatgataggaggtgcttttctccatgcaactgttcagaccttagttgagaaacttacttcaactgagtttcttgattacatcaaa 10076731  T
Q  224 aacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaa 309  Q
    ||||| || || ||||| |||||||| || ||| |  |||||||  | |||| |||||| | ||| || |||||||||||||||||    
T  10076732 aacacaaatctgaatgtatcactcttcagacagttacaaacaaccatgctcaatcttcaggctgtactagatgatgcagaggagaa 10076817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 122 - 303
Target Start/End: Original strand, 13289029 - 13289210
Alignment:
Q  122 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 221  Q
    ||||| ||||||||| || || | |||||||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  13289029 tagaaaatggctgcaactttggtgggaggagcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 13289128  T
Q  222 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 303  Q
     |||||  ||||| |||  ||||||||||    || || |||||||||| ||| ||||||| || |||||||||||||||||    
T  13289129 gaaacaacaagctgaattcctcactcttggcagagttggaaacaacactactcgctcttcaggtggtgctggatgatgcaga 13289210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 10505150 - 10505250
Alignment:
Q  123 agaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaa 222  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||    
T  10505150 agaagatggctgcaactatgataggaggaacttttctctctgcaactgttcagaccttagttgacaaacttgcttcaacagagtttcgtgattacatcaa 10505249  T
Q  223 a 223  Q
    |    
T  10505250 a 10505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 303
Target Start/End: Original strand, 13160344 - 13160525
Alignment:
Q  122 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 221  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| | |||||||||||||  |||||||  |||||||||||    
T  13160344 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatca 13160443  T
Q  222 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 303  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| || |||||||||||||||||    
T  13160444 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatgatgcaga 13160525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 303
Target Start/End: Original strand, 13332268 - 13332449
Alignment:
Q  122 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 221  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  13332268 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 13332367  T
Q  222 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 303  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| |  |||||||||||||||||    
T  13332368 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggtgctggatgatgcaga 13332449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 303
Target Start/End: Original strand, 13170395 - 13170576
Alignment:
Q  122 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 221  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  13170395 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 13170494  T
Q  222 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 303  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| |  || || |||||||||||    
T  13170495 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggttcttgatgatgcaga 13170576  T

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Target: chr3; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 303
Target Start/End: Original strand, 13343453 - 13343634
Alignment:
Q  122 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 221  Q
    ||||| ||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  ||||||||| |    
T  13343453 tagaaaatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacataa 13343552  T
Q  222 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 303  Q
     |||||| ||||| |||  ||| || ||     || || |||||||||| ||| ||||||| |  |||||||||||||||||    
T  13343553 gaaacaccaagctgaattcctcgctgtttgcagagttggaaacaacactgctcgctcttcaggcggtgctggatgatgcaga 13343634  T

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Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 10084150 - 10084218
Alignment:
Q  188 aaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcag 256  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  10084150 aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgaggcag 10084218  T

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Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10376728 - 10376658
Alignment:
Q  1 caaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgctc 71  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||| ||||||    
T  10376728 caaccattcaaaaacagcactgttagtgttatccattcactcacaagcgagtcttctttgagtctttgctc 10376658  T

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Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 10191073 - 10191138
Alignment:
Q  188 aaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgagg 253  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  10191073 aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgagg 10191138  T

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Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10364680 - 10364611
Alignment:
Q  1 caaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgct 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||| |||||    
T  10364680 caaccattcaaaaacagcactgttagtgttatccattcattcacaagcaagtcttctttgagtctttgct 10364611  T

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Target: chr3; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 11131658 - 11131544
Alignment:
Q  195 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 294  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| |||||||||||||||| |||| |  |||||||||| ||   |||||||| |||||||||    
T  11131658 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctgga 11131559  T
Q  295 tgatgcagaggagaa 309  Q
    |||||| ||||||||    
T  11131558 tgatgctgaggagaa 11131544  T

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Target: chr3; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10076442 - 10076505
Alignment:
Q  1 caaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtc 64  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||| ||| |||||||||||||    
T  10076442 caaccactcaaaaacagcgctgttagtgttatccattcattcacaagcgagtcttctttgagtc 10076505  T

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Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 10888743 - 10888857
Alignment:
Q  195 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 294  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| |||||||||||||||| |||| |  ||||||| || ||   |||||||| |||||||||    
T  10888743 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacgctgctggttcttcaagctgtgctgga 10888842  T
Q  295 tgatgcagaggagaa 309  Q
    |||||| ||||||||    
T  10888843 tgatgctgaggagaa 10888857  T

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Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 11149486 - 11149372
Alignment:
Q  195 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 294  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| |||||||||||||||| |||| |  |||||||||| ||   |||||||| |||||||||    
T  11149486 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctgga 11149387  T
Q  295 tgatgcagaggagaa 309  Q
    |||||| || |||||    
T  11149386 tgatgctgatgagaa 11149372  T

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Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 8860723 - 8860837
Alignment:
Q  195 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 294  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| || ||||||||||||| |||| |  || |||| || ||   |||||||| |||||||||    
T  8860723 cttcaaccgagtttcgtgatttcatcaacaacagaaagctgaacgtctcactcttgaagcagttacaagcaacgctgctggttcttcaagctgtgctgga 8860822  T
Q  295 tgatgcagaggagaa 309  Q
    |||||||||||||||    
T  8860823 tgatgcagaggagaa 8860837  T

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Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 122 - 309
Target Start/End: Original strand, 26906261 - 26906448
Alignment:
Q  122 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 221  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||    
T  26906261 tagaagatggctgcagctatgataggagaagcttttctctctgcaattgttcagactttagttgagaaacttgtttcaacacagtttcttgattacatca 26906360  T
Q  222 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaa 309  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||    
T  26906361 aaaacaccaagctcaatgtctcactcttgaggcagctaaaaacaacactgctcactctgcaggttgtgctggatgatgcagaggagaa 26906448  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 3438617 - 3438480
Alignment:
Q  147 gaggagcttttctctctgcaactgttcagac----tttagtagagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtct 242  Q
    ||||||||||||||| ||||| | |||||||     ||||| ||||||||||||||| | || |||||||||||||||||||| || ||| | ||| |||    
T  3438617 gaggagcttttctctatgcaatttttcagaccttaattagttgagaaacttgcttcatcggattttcttgattacatcaaaaataccaagttaaatatct 3438518  T
Q  243 cactcttgaggcagctgaaaacaacacttctcactctt 280  Q
    |||| ||||||| | |  | |||||||| |||||||||    
T  3438517 cacttttgaggccgttcgatacaacactgctcactctt 3438480  T

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Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 44958402 - 44958256
Alignment:
Q  103 tttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaaca 202  Q
    |||| |||||||||| | |||||||||||||||| ||||||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||    
T  44958402 tttgctttaacaataacactagaagatggctgcaactatgataggaggagcttttctatctgcaactgttcaaaccttagttgagaaacttgcttcaaca 44958303  T
Q  203 gagtttcttgattacatcaaaaacactaagctcaatgtctcactctt 249  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  44958302 gagtttcttgattacatcaaaaacaccaagatcaatgtctcactctt 44958256  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 44958265 - 44958227
Alignment:
Q  271 tctcactcttcaagttgtgctggatgatgcagaggagaa 309  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  44958265 tctcactcttcaggttgtgcttgatgatgcagaggagaa 44958227  T

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Target: scaffold0002 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 303
Target Start/End: Complemental strand, 146644 - 146463
Alignment:
Q  122 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 221  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| | |||||||||||||  |||||||  |||||||||||    
T  146644 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatca 146545  T
Q  222 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 303  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| || |||||||||||||||||    
T  146544 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatgatgcaga 146463  T

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Target: scaffold0002; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 303
Target Start/End: Complemental strand, 136593 - 136412
Alignment:
Q  122 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 221  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  136593 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 136494  T
Q  222 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatgcaga 303  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| |  || || |||||||||||    
T  136493 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggttcttgatgatgcaga 136412  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 283
Target Start/End: Original strand, 19956981 - 19957146
Alignment:
Q  122 tagaagatggctgcagctatgattggaggagcttttctctctgcaac-tgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatc 220  Q
    |||||||||| |||| ||||||| ||||||||||||||||| ||||| | |||| || ||||| |||||||||||||| || || ||| || |||||||     
T  19956981 tagaagatggttgcaactatgataggaggagcttttctctcagcaacctattcaaaccttagttgagaaacttgcttccacggaatttttttattacata 19957080  T
Q  221 aaaaacacta---agctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaa 283  Q
    ||||| | ||   || | ||| ||||||| ||||||||| | ||||||||||| | ||||||||||    
T  19957081 aaaaaaaatactgagttgaatatctcacttttgaggcagttaaaaacaacactccccactcttcaa 19957146  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 304
Target Start/End: Original strand, 29836112 - 29836219
Alignment:
Q  197 tcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 296  Q
    |||||||||||||  |||||| |||| ||||  ||||| |||  ||| ||||||| |||| || |||||||||||||||||||| |||  ||||| | ||    
T  29836112 tcaacagagtttcaagattacgtcaacaacatgaagctgaatcactctctcttgaagcagttgcaaacaacacttctcactcttgaagcggtgctagttg 29836211  T
Q  297 atgcagag 304  Q
    ||||||||    
T  29836212 atgcagag 29836219  T

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