View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21045_high_24 (Length: 323)

Name: NF21045_high_24
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21045_high_24
NF21045_high_24
[»] scaffold0083 (2 HSPs)
scaffold0083 (142-323)||(50614-50795)
scaffold0083 (1-111)||(50805-50915)
[»] chr5 (3 HSPs)
chr5 (1-110)||(26793376-26793486)
chr5 (1-87)||(26818892-26818979)
chr5 (193-232)||(26793517-26793555)
[»] chr3 (24 HSPs)
chr3 (1-110)||(10214793-10214903)
chr3 (1-110)||(10223534-10223644)
chr3 (1-109)||(10103857-10103966)
chr3 (68-232)||(11768325-11768494)
chr3 (1-99)||(10123657-10123755)
chr3 (1-99)||(10180311-10180409)
chr3 (161-323)||(10076299-10076459)
chr3 (1-99)||(10256426-10256524)
chr3 (153-232)||(10031125-10031204)
chr3 (147-232)||(9838029-9838114)
chr3 (147-232)||(9848907-9848992)
chr3 (47-99)||(10028802-10028854)
chr3 (147-232)||(9837824-9837907)
chr3 (147-232)||(9848702-9848785)
chr3 (147-232)||(10126060-10126145)
chr3 (153-232)||(10657930-10658006)
chr3 (147-232)||(10662639-10662721)
chr3 (171-232)||(10104042-10104100)
chr3 (193-232)||(10214934-10214972)
chr3 (193-232)||(10223675-10223713)
chr3 (153-232)||(10516630-10516706)
chr3 (197-232)||(10123754-10123790)
chr3 (197-232)||(10256523-10256559)
chr3 (166-222)||(10259874-10259930)


Alignment Details
Target: scaffold0083 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 142 - 323
Target Start/End: Complemental strand, 50795 - 50614
Alignment:
Q  142 gtgactgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 241  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50795 gtgactgcaatttttcctttttctttgtatcaattattttgtgggatgtgggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 50696  T
Q  242 actgttaaccattaattcacatacagctaagtcttcatgagtttacctttactatatacacttccaaccattcaaaaacagc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50695 actgttaaccattaattcacatacagctaagtcttcatgagtttacctttactatatgcacttccaaccattcaaaaacagc 50614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 50915 - 50805
Alignment:
Q  1 cacagatgataagaaaaatgacaacatgatacatttattttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  50915 cacagatgataagaaaaatgacaacatgatacatttattttcgtatatgagaggagtttaactagaaattgcatatttgaatcactttccaaaagtaaaa 50816  T
Q  101 atatatataat 111  Q
    || ||||||||    
T  50815 atgtatataat 50805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26793376 - 26793486
Alignment:
Q  1 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 99  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||    
T  26793376 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaa 26793475  T
Q  100 aatatatataa 110  Q
    ||| |||||||    
T  26793476 aatgtatataa 26793486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26818892 - 26818979
Alignment:
Q  1 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcactt 87  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  26818892 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactt 26818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 26793517 - 26793555
Alignment:
Q  193 gtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26793517 gtccaatattaac-actgctgagctttgctttccagcttt 26793555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 10214793 - 10214903
Alignment:
Q  1 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 99  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||    
T  10214793 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaa 10214892  T
Q  100 aatatatataa 110  Q
    ||| |||||||    
T  10214893 aatgtatataa 10214903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 10223534 - 10223644
Alignment:
Q  1 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 99  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||    
T  10223534 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaa 10223633  T
Q  100 aatatatataa 110  Q
    ||| |||||||    
T  10223634 aatgtatataa 10223644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 10103857 - 10103966
Alignment:
Q  1 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 99  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||    
T  10103857 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggaatttaactagaaattgcatatttgactcactttcctaaagtaaa 10103956  T
Q  100 aatatatata 109  Q
    ||| ||||||    
T  10103957 aatgtatata 10103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 11768325 - 11768494
Alignment:
Q  68 attgcatatttgaatcacttaccaaaagtaaaaatatatataat-tatatgctatttaa-gattccgatggttttagtgac---tgcaatttttcctttt 162  Q
    |||||||||||||||||||| |||||||||||||| |||||||  ||| |||||||||| |||| |||||  |||| | |    ||||| ||||||||||    
T  11768325 attgcatatttgaatcactttccaaaagtaaaaatgtatataaagtatctgctatttaaagatttcgatgcctttaattaagtgtgcaacttttcctttt 11768424  T
Q  163 tcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    || ||||||||||||||||||  ||||| |||||||||||||||| || ||| ||||||||||| |||||    
T  11768425 tctttgtatcaattattttgtgggatgtaggtccaatattaaccaatggtgaactttgctttcccgcttt 11768494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10123657 - 10123755
Alignment:
Q  1 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 99  Q
    ||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10123657 cacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10180311 - 10180409
Alignment:
Q  1 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 99  Q
    ||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10180311 cacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 323
Target Start/End: Original strand, 10076299 - 10076459
Alignment:
Q  161 tttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt-aaatacagtactgttaaccattaattc 259  Q
    |||| ||||||||||||||||||  ||||| |||||||||||||||||| ||||||||| |||||||||||| ||||   ||    ||   |||||||||    
T  10076299 tttccttgtatcaattattttgtgggatgtgggtccaatattaaccactactgagctttactttccagctttcaaattttgt----ttcttcattaattc 10076394  T
Q  260 acatacagctaagtcttcatgagttta-cctttactatatacacttccaaccattcaaaaacagc 323  Q
    |||||||  ||||||||| ||||| || ||||||| |||| |||||||||||| |||||||||||    
T  10076395 acatacatataagtcttcttgagtctaccctttacaatatgcacttccaaccactcaaaaacagc 10076459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10256426 - 10256524
Alignment:
Q  1 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 99  Q
    ||||| |||||||||||||||||  ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10256426 cacaggtgataagaaaaatgacat-atgctacgtttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10256524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 10031125 - 10031204
Alignment:
Q  153 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || |||||||||||||||||||||    
T  10031125 tttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgagctttgctttccagcttt 10031204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 9838029 - 9838114
Alignment:
Q  147 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9838029 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 9848907 - 9848992
Alignment:
Q  147 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9848907 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9848992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 10028802 - 10028854
Alignment:
Q  47 atgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 99  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10028802 atgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 9837824 - 9837907
Alignment:
Q  147 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9837824 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9837907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 9848702 - 9848785
Alignment:
Q  147 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9848702 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9848785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 10126060 - 10126145
Alignment:
Q  147 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    ||||| |||| ||||| | |||||||||||||||||   ||||| ||||||||||||| || || ||| |||||||||||||||||    
T  10126060 tgcaactttttcttttgctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgacctttgctttccagcttt 10126145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 10657930 - 10658006
Alignment:
Q  153 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10657930 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---attaatcactgatgacctttgctttccagcttt 10658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 10662639 - 10662721
Alignment:
Q  147 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    ||||| |||||||||||| |||||| |||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10662639 tgcaacttttcctttttctttgtattaattattttgaaggatgtgggtcc---attaatcactgatgaactttgctttccagcttt 10662721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 10104042 - 10104100
Alignment:
Q  171 tcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    |||||||||||||  |||||  ||||||||||||| ||||||||||||||||||||||||||    
T  10104042 tcaattattttgtgggatgt--gtccaatattaac-actgctgagctttgctttccagcttt 10104100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 10214934 - 10214972
Alignment:
Q  193 gtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10214934 gtccaatattaac-actgctgagctttgctttccagcttt 10214972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 10223675 - 10223713
Alignment:
Q  193 gtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10223675 gtccaatattaac-actgctgagctttgctttccagcttt 10223713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 10516630 - 10516706
Alignment:
Q  153 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 232  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   | ||| ||||| ||| || ||||||||||||||    
T  10516630 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---agtaatcactgatgacctatgctttccagcttt 10516706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 10123754 - 10123790
Alignment:
Q  197 aatattaaccactgctgagc-tttgctttccagcttt 232  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10123754 aatattaaccactgctgagcttttgctttccagcttt 10123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 10256523 - 10256559
Alignment:
Q  197 aatattaaccactgctgagc-tttgctttccagcttt 232  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10256523 aatattaaccactgctgagcttttgctttccagcttt 10256559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 10259874 - 10259930
Alignment:
Q  166 ttgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgct 222  Q
    ||||||||||||||||| | ||||| ||||||||||||| || || ||| |||||||    
T  10259874 ttgtatcaattattttgaaggatgtgggtccaatattaaacaatgatgacctttgct 10259930  T

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