View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_high_25 (Length: 314)
Name: NF21045_high_25
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 121 - 291
Target Start/End: Original strand, 41968670 - 41968852
Alignment:
| Q |
121 |
ctcaatggtagctccaattatatgagcctgaaataaaatcattcatgtaa---catta---------taaagaattaatggaacccttttgtacattgat |
208 |
Q |
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| T |
41968670 |
ctcaatggtagctccaattatatgagcctgaaataaaatcattcatgtaataacattaaaaaggatataaagaattaatggaacccttttgtacattgat |
41968769 |
T |
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| Q |
209 |
agaaaatcatgtaaataattttggtcatcacctcttctttatttacagttcattactagttcagttcttagatctctgctcct |
291 |
Q |
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| T |
41968770 |
agaaaatcatgtaaataattttggtcatcacctcttctttatttacagttcattactagttcaattcttagatctctcctcct |
41968852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 41968575 - 41968621
Alignment:
| Q |
20 |
ggagtggcaggagttgctggagttgaatctgaagctgtagttgaagt |
66 |
Q |
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| T |
41968575 |
ggagttgcaggagtttctggagttgaatctgaagctgtagttgaagt |
41968621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 1235723 - 1235782
Alignment:
| Q |
121 |
ctcaatggtagctccaattatatgagcctgaaataaaatcattcatgtaacattataaag |
180 |
Q |
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| T |
1235723 |
ctcaatggtagctcctattatatgagcctgaaataaaatcattcatgtaacattaaaaag |
1235782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 29522024 - 29521958
Alignment:
| Q |
225 |
aattttggtcatcacctcttctttatttacagttcattactagttcagttcttagatctctgctcct |
291 |
Q |
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| T |
29522024 |
aattttggtcatcacctcttctttatttacagttcattactccttcaattcctagatctctcctcct |
29521958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 35739589 - 35739644
Alignment:
| Q |
226 |
attttggtcatcacctcttctttatttacagttcattactagttcagttcttagat |
281 |
Q |
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| T |
35739589 |
attttggtcatcacctcttctttctttacggttcattactccttcaattcttagat |
35739644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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