View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21045_high_30 (Length: 300)

Name: NF21045_high_30
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21045_high_30
NF21045_high_30
[»] chr3 (18 HSPs)
chr3 (5-285)||(679339-679620)
chr3 (139-285)||(751143-751290)
chr3 (5-141)||(747402-747538)
chr3 (18-134)||(7324687-7324803)
chr3 (5-132)||(2501817-2501944)
chr3 (17-134)||(2491754-2491871)
chr3 (17-137)||(9594898-9595018)
chr3 (21-134)||(9566094-9566207)
chr3 (21-125)||(7443269-7443373)
chr3 (27-134)||(9562235-9562342)
chr3 (17-134)||(2474777-2474895)
chr3 (17-126)||(754888-754997)
chr3 (17-122)||(2644633-2644738)
chr3 (17-122)||(2659420-2659525)
chr3 (17-114)||(7334560-7334657)
chr3 (17-141)||(2631014-2631138)
chr3 (17-134)||(2476309-2476426)
chr3 (141-175)||(2632504-2632538)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 679620 - 679339
Alignment:
Q  5 atggacatcatcaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 104  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679620 atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 679521  T
Q  105 gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679520 gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc 679421  T
Q  205 tttcaacactt-ctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaa 285  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679420 tttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaa 679339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 751290 - 751143
Alignment:
Q  139 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacactt-ctcttttgattatcatagtatc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  238 atatacttcacatgtgtataaagaattcacaacatttagctttctaaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaa 751143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 747538 - 747402
Alignment:
Q  5 atggacatcatcaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 104  Q
    ||||||||||  ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |    
T  747538 atggacatcactaagctttggatatgatcatttcattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggct 747439  T
Q  105 gattattggacaagaatagagggcatcccacattatt 141  Q
    |||||||||| ||||||||||||||||||||||||||    
T  747438 gattattggaaaagaatagagggcatcccacattatt 747402  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 7324803 - 7324687
Alignment:
Q  18 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 117  Q
    |||||||| || |||||||| ||||||||  |||||||  |||||||||||||  ||||  | ||| |||||||||||||||||  ||||||||||||||    
T  7324803 agctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaa 7324704  T
Q  118 gaatagagggcatccca 134  Q
    ||||||||| |||||||    
T  7324703 gaatagaggacatccca 7324687  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 2501817 - 2501944
Alignment:
Q  5 atggacatcatcaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat 104  Q
    ||||||||||  ||||||||||||||||||||||||||||||  |||||||  |||||||||||   ||||| || ||| | |||||||||||||||  |    
T  2501817 atggacatcactaagctttggatatgatcatttcattgataattataaggtcattgttgtttctgacgaaaatgaagttagggttaatactttggggact 2501916  T
Q  105 gattattggacaagaatagagggcatcc 132  Q
    |||||||||| ||  ||||||| |||||    
T  2501917 gattattggagaaagatagaggacatcc 2501944  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 2491754 - 2491871
Alignment:
Q  17 aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca 116  Q
    ||||||||| |||||||||||||||||| |  |||||||  ||| ||||||||| ||||| || ||| ||||| |||||||||||  |||||||||||||    
T  2491754 aagctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggaca 2491853  T
Q  117 agaatagagggcatccca 134  Q
    |||||  ||| |||||||    
T  2491854 agaatcaaggacatccca 2491871  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 9595018 - 9594898
Alignment:
Q  17 aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca 116  Q
    |||||| || ||||||||||||||||||||  |||||||  ||| | || ||||  |||| || |||| |||| |||||||||||  |||||||||||||    
T  9595018 aagcttcgggtatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattggaca 9594919  T
Q  117 agaatagagggcatcccacat 137  Q
    |||||||||| ||||||||||    
T  9594918 agaatagaggacatcccacat 9594898  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 9566207 - 9566094
Alignment:
Q  21 tttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaa 120  Q
    ||||| ||||||||||||||||||||  ||||| |  ||  ||||||| || |||| || ||| ||||| |||||||||||  |||||||||||||||||    
T  9566207 tttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggacaagaa 9566108  T
Q  121 tagagggcatccca 134  Q
    |||||| |||||||    
T  9566107 tagaggacatccca 9566094  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 7443373 - 7443269
Alignment:
Q  21 tttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaa 120  Q
    ||||| ||||||||||||||||||||  |||| ||||||| | |||||||  || | ||||||| ||||||| ||||||||  ||||||||||| |||||    
T  7443373 tttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggagaagaa 7443274  T
Q  121 tagag 125  Q
    |||||    
T  7443273 tagag 7443269  T

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Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 9562342 - 9562235
Alignment:
Q  27 tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 126  Q
    ||||||||||||||||||||  |||||||  ||||||||||| |  |||| || ||| ||||| |||||||||||  |||||||||||  ||||||||||    
T  9562342 tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg 9562243  T
Q  127 gcatccca 134  Q
     |||||||    
T  9562242 acatccca 9562235  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 2474777 - 2474895
Alignment:
Q  17 aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattggac 115  Q
    ||||||||||||||||||||||||||||||  | ||||   ||||  |||||||  |||| || ||| |||||||||||||   ||| ||||||||||||    
T  2474777 aagctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattggac 2474876  T
Q  116 aagaatagagggcatccca 134  Q
    ||||||||||| |||||||    
T  2474877 aagaatagaggacatccca 2474895  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 754997 - 754888
Alignment:
Q  17 aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca 116  Q
    ||||||||| ||||||||||||||| ||||  | |||||  ||  ||||||| || |||| || ||||||||| |||| ||||||  |||||||||||||    
T  754997 aagctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggaca 754898  T
Q  117 agaatagagg 126  Q
    ||||||||||    
T  754897 agaatagagg 754888  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 2644738 - 2644633
Alignment:
Q  17 aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca 116  Q
    |||||||||||||||||| ||| |||||||  |||||||  || ||||||||   ||||| || ||| | |||||||||||||||  |||||||||||||    
T  2644738 aagctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactttggggactgattattggaca 2644639  T
Q  117 agaata 122  Q
    ||||||    
T  2644638 agaata 2644633  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 2659525 - 2659420
Alignment:
Q  17 aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca 116  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||    |||||   |||||| | || |||||||||||||||||  ||||||||||| |    
T  2659525 aagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggaga 2659426  T
Q  117 agaata 122  Q
    ||||||    
T  2659425 agaata 2659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 7334657 - 7334560
Alignment:
Q  17 aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattgga 114  Q
    |||||| |||||||||||||||||||||||  ||||||| |||| |||||||  | ||||| | ||| ||||| ||||||||||   |||||||||||    
T  7334657 aagcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga 7334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 2631014 - 2631138
Alignment:
Q  17 aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca 116  Q
    ||||||||| ||||||  ||||||||||||  |||||||  ||| |||||||||  |||| || |||| | || ||||||| |||  ||||||||||| |    
T  2631014 aagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaaa 2631113  T
Q  117 agaatagagggcatcccacattatt 141  Q
    |||||||| | ||||||| ||||||    
T  2631114 agaatagacgacatcccatattatt 2631138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 2476309 - 2476426
Alignment:
Q  17 aagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggaca 116  Q
    ||||||||| ||||||||||  ||||||||  | |||||  || ||||||||    |||| || ||| |||||||||||||||||  |||||||||||||    
T  2476309 aagctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactttggggactgattattggaca 2476408  T
Q  117 agaatagagggcatccca 134  Q
    |||||  ||| |||||||    
T  2476409 agaatgcaggacatccca 2476426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 2632504 - 2632538
Alignment:
Q  141 ttcaattctccaaaccctgcagttctaaaatcagc 175  Q
    |||||||||||||||||||||||| ||||||||||    
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagc 2632538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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