View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_high_4 (Length: 639)
Name: NF21045_high_4
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 50442910 - 50443253
Alignment:
| Q |
1 |
ttatgcatatggtagaaagagcgtaataatcataatatgtacaaggcttacttacttatggtgaaaaaagaaggtgatgaaggaagagaaggtgccgaaa |
100 |
Q |
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| T |
50442910 |
ttatgcatatggtagaaagagcgtaataatcataatatgtacaaggcttacttacttatggtgaaaaaagaaggtgatgaaggaagagaaggtgccgaaa |
50443009 |
T |
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| Q |
101 |
ccctgacatggatgagaattacagttgcatttcttgtgaggagattgtcaacaacccatttgagtgcattttggcttcccttttctttgtcaattgccac |
200 |
Q |
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| T |
50443010 |
ccctgacatggatgagaattacagttgcatttcttgtgaggagattgtcaacaacccatttgagtgcattttggcttcccttttctttgtcaattgccac |
50443109 |
T |
|
| Q |
201 |
tgctattaacccctttaccccttccttattctctgatgaattctttggcaaccacattcctctttttctaccaaaactcttggtgttctttcaatgaaca |
300 |
Q |
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| T |
50443110 |
tgctattaacccctttaccccttccttgttctctgatgaattctttggcaaccacattcctctttttctaccaaaactcttagtgttctttcaatgaaca |
50443209 |
T |
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| Q |
301 |
caaaccaaactatagaaaccagaaaaaataatctcttatctccc |
344 |
Q |
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| T |
50443210 |
caaaccaaactatagaaaccagaaaaaataatctcttatctccc |
50443253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 438 - 621
Target Start/End: Original strand, 50443347 - 50443531
Alignment:
| Q |
438 |
ctcctctgtacctcttctagcaaaagactttttcggtatgtgattgatttgtttactaattttcaggttcttttgtgttaagaacaaaataatagtaaat |
537 |
Q |
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| T |
50443347 |
ctcctctgtacctcttctagcaaaagactttttcggtatgtgattgatttgtttactaattttcaggttcttttgtgttaagaacaaaataatagtaaat |
50443446 |
T |
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| Q |
538 |
gttcaattttcctcatacaacaaatagcaaccatttttgggc-nnnnnnnaaattactattttgagcaattttcactaatgtggc |
621 |
Q |
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| T |
50443447 |
gttcaattttcctcatacaacaaatagcaaccatttttgggcttttttttaaattactattttgagcaattttcactaatgtggc |
50443531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 50422671 - 50422785
Alignment:
| Q |
104 |
tgacatggatgagaattacagttgcatttcttgtgaggagattgtcaacaacccatttgagtgcattttggcttcccttttctttgtcaattgccactgc |
203 |
Q |
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| T |
50422671 |
tgacatggatgagaattacagttgcattttttgtgaggagattatcaatagcccatttgaaagcacgatggcttcccttttcattatctattgccactgc |
50422770 |
T |
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| Q |
204 |
tattaacccctttac |
218 |
Q |
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|| ||| || ||||| |
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| T |
50422771 |
tactaatccatttac |
50422785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 311
Target Start/End: Original strand, 50447626 - 50447819
Alignment:
| Q |
106 |
acatggatgagaattacagttgcatttcttgtgaggagattgtcaacaacccatttgagtgcattttggcttcccttttctttgtcaattgccactgcta |
205 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||| |||| | ||||||||| |||| ||||| ||||||| |||| | ||||||||||| |
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| T |
50447626 |
acatggatgagaatcacatttgcatttcttgtgaggagattatcaatagcccatttgaatgcacggtggctctccttttcgttgtttactgccactgcta |
50447725 |
T |
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| Q |
206 |
ttaacccctttaccccttccttattctctgatgaattctttggcaaccacattcctctttttctaccaaaactcttggtgttctttcaatgaacacaaac |
305 |
Q |
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| T |
50447726 |
ttaatccatttacaccatcctt------------cttctttggtaacgacattcctctctttgcaccaaaactcttgatgttctttcaatagacccaaac |
50447813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 1269063 - 1268959
Alignment:
| Q |
99 |
aaccctgacatggatgagaattacagttgcatttcttgtgaggagattgtcaacaacccatttgagtgcattttggcttcccttttctttgtcaattgcc |
198 |
Q |
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|||| ||||||||||||||| | ||||| | | ||||| ||||| |||||| ||||||||||||||||||||||||| || ||| |||| |||||| |
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| T |
1269063 |
aaccttgacatggatgagaacaatagttgaaccttttgtggtgagatggtcaacggcccatttgagtgcattttggcttcctttatctgtgtctattgcc |
1268964 |
T |
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| Q |
199 |
actgc |
203 |
Q |
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||||| |
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| T |
1268963 |
actgc |
1268959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 1262728 - 1262645
Alignment:
| Q |
106 |
acatggatgagaattacagttgcatttcttgtgaggagattgtcaacaacccatttgagtgcattttggcttcccttttctttgt |
190 |
Q |
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| T |
1262728 |
acatggatgagaactatagtttcaccacttgttagaagcttttcaacaacccatttgactgcattttggc-tcccttttttttgt |
1262645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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