View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21045_high_42 (Length: 216)
Name: NF21045_high_42
Description: NF21045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21045_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 40765397 - 40765197
Alignment:
| Q |
1 |
tcacatttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataagacttctatagttcttttcccaagcaccatagacatgtt |
100 |
Q |
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| T |
40765397 |
tcacatttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataggacttctatagttcttttcccaagcaccatagacatgtt |
40765298 |
T |
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| Q |
101 |
aaaataaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtctttaagtcatcattgaggcgcatgtagaatgctttgccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40765297 |
aaaataaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtctttaagtcatcattgaggcgcatgtagaatgctttgccttt |
40765198 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
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| |
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| T |
40765197 |
g |
40765197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 42912939 - 42912750
Alignment:
| Q |
6 |
tttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataagacttctatagttcttttcccaagcaccatagacatgttaaaat |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42912939 |
tttctcgatctctctttatttctaattctcgtctacactgcttactacgatggtaggacttctgtagttcttttcccaagcaccatagacatgttaaaat |
42912840 |
T |
|
| Q |
106 |
aaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtctttaagtcatcattgaggcgcatgtagaatgctttg |
195 |
Q |
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|||| | |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42912839 |
aaaatatacaggatacatacctttgggacaagaacatccatagcagccactgtctctaagtcatcattgaggcgcatgtagaatgctttg |
42912750 |
T |
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